Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5062g00002 ATGGTATCCAAAAACCCGAACCCGCCCGAGGGCTTCTACTTGGATCCGAGTGGCATGGCTCTACCGGGGCTCGCCCCCTTCGCCTCCGTGTCCGCCGCCGCTGCCACGGCGGTTTCCGCCACGAACTCGTTGGAGGACGCCGCCAAGAAGATCCGCAAGCCCTACACTATCACCAAGTCAAGGGAGAACTGGACCGAACCCGAACACGACAAGTTCCTCGAAGCCCTTCAACTGTTTGACCGTGACTGGAAAAAGATTGAAGCATTTGTTGGGTCAAAGACTGTTATACAGATACGTAGCCATGCACAGAAATACTTTCTAAAAGTTCAGAAGAGTGGGGCAAGTGAACATCTTCCTCCACCCAGGCCTAAAAGAAAAGCTGCCCATCCATATCCTCAGAAAGCTTCCAAAAATGCTCCTGTACTCTCACAAGTATCAGGATCTTTTCAATCTTCATCTGCTTTGCATGAACCTGGATATATCGTGAAGCATGATTCCTCACCAATGCTTAAAACTCCTATAATGAACACTGTGGTGTCTTCCTGGTCAAACAACACCATGCAAACAACCAATTTATTGCATGTGCCAAAAGTGAAAAATTCTTGCAGTAGCAAGGAAAGCACACCTAGAGTGCCGCCAGTTGGTGAATCTAATGGTCAAGGGAATAATAGCAAGCCACTGAGAGTTCTTCCGGATTTTAATCAGGTATATAGCTTCATTGGCAGTGTATTTGATCCAAATGCAACTGAACATCTGCAGAAACTAAAAAAGATGGACCGTATAGATGTTGAGACGGTGTTACTGTTGATGAGAAACCTGTCTGTCAATTTAACTAGCCCAGATTTTGAGGATCATAGAAAGTTGCTTTCATCATATGAGGTTGAAGAGGACACAGATAACTACATCAATGCAGATAGACCCATGCACGATGAGGAGTTGAAGAGTGCTACTTAA 954 0.4581 MVSKNPNPPEGFYLDPSGMALPGLAPFASVSAAAATAVSATNSLEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGASEHLPPPRPKRKAAHPYPQKASKNAPVLSQVSGSFQSSSALHEPGYIVKHDSSPMLKTPIMNTVVSSWSNNTMQTTNLLHVPKVKNSCSSKESTPRVPPVGESNGQGNNSKPLRVLPDFNQVYSFIGSVFDPNATEHLQKLKKMDRIDVETVLLLMRNLSVNLTSPDFEDHRKLLSSYEVEEDTDNYINADRPMHDEELKSAT 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5062g00002 317 MobiDBLite consensus disorder prediction 199 226 - -
Gabi5062g00002 317 MobiDBLite consensus disorder prediction 111 141 - -
Gabi5062g00002 317 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Gabi5062g00002 317 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Gabi5062g00002 317 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
Gabi5062g00002 317 SMART sant 60 108 IPR001005 -
Gabi5062g00002 317 CDD SANT 63 106 IPR001005 -
Gabi5062g00002 317 Gene3D - 63 111 - -
Gabi5062g00002 317 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Gabi5062g00002 317 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Gabi5062g00002 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Gabi5062g00002 317 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Gabi5062g00002 317 PANTHER SWI/SNF COMPLEX-RELATED 33 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5062g00002 Gabi-Chr5062 17762 26765 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi5062g00002 Myb_DNA-binding 4.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5062g00002 - - gmx:100783949 478.789