Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5060g00004 ATGGCTAAAATGTTCTACTTCTACTTTATCTTAATCCACATTTCTTTGAGCTTTGTGCTGACCCAATCAGCACCTGAAAAGTCTCTTATAACCAATGTTCCAGGCTTCAATGGCACTCTACCTTCCAGGCACTATGCTGGGTATGTGACTGTGGATGAAAGTCATGGAAGGGACTTGTATTACTACTTCGTTGTATCTGAAGGTAAACCATCTAAGGACCCAGTGGTTCTATGGCTTAATGGTGGACCAGGGTGCTCTAGCTTCGATGGCTTTGTATATGAGCATGGTCCTTTTAATTTTGAAAAACCAAAGACTAAGGGAACCCTGCCAAGGTTGCAACTCAATCCATACAGCTGGTCAAAGGTTTCCAACATTATATATTTGGATTCTCCTGCTGGAGTGGGGTTTTCATACTCAAAGAATGAATCTGATTACACTACTGGAGATGTAAAGACAGCCTCTGATACACATGCTTTTCTCCTCAAGTGGTTTGAACTATACCCTGAGTTCCTTCCCAACCCACTCTTCATTTCTGGAGAGTCCTATGCTGGAGTTTATGTGCCTACTCTTGCTGATGAAATAGTCAAAGGAATTGAAGCTAACACAACGCCCAAACTAAATTTCAAGGGTTACATGGTTGGAAATGCTGTTACAGATGAAGAATTTGATGGCAATGCTATTGTTCCATTTGCATATGGGATGGGTCTTATCAGTGATGAACTGTTTGGGGAGATCACAAAACAATGCAGTGGGAAATTCTATGATCCAGTCAACGCAAAGTGCAAAGAAATGTTGTCAAAATTTGATGGGGACGTTGGTGGGGTAAACATATATGACATTCTGGAACCATGCTATCATGATGAAGAGACAGAAAAGAATAAAAGCTCCTATCATAAGTTGCCAATCAGCTTTAGGCAATTGGGTAAAACTGATAGACCTATGCCTGTGAGAAAAAGAATGTTTGGTCGTGCTTGGCCCTTAAGAGCTCCTGTGAAAGATGGAATTGTACCAACTTGGCCACAACTAAGCAATGACCCCTCTGTTCCATGCACTGATGATGAGGTTGCAACCTTATGGCTGAACAATCCTGAGGTCAGGAGAGCAATCCACACAGTAGAGAAAAATGTGGTCAGTGATTGGCAATTATGTACCGACCAAATTGAATACAATCATGATACTGGGAGCATGATCAAGTACCATGAGAAGCTAACTTCCAAAGGATATCGAGCACTTATATACAGTGGTGATCATGACATGTGTGTCCCATTTACTGGAAGCCGAGCATGGACTAGTTCACTTGGATACAAGATTGTTGATGAATGGAGACCTTGGTCAATCAATGATCAAGTTGCTGGGTATATACAAGGATATGAAAAAAATCTTACTTTTCTCACGATAAAGGGAGCTGGGCATACTGTTCCAGAATATAAACCACAGGAGGCATTGTATTTTTACCAACGTTTTATGGCTGGACTGCCTCTATAA 1485 0.4128 MAKMFYFYFILIHISLSFVLTQSAPEKSLITNVPGFNGTLPSRHYAGYVTVDESHGRDLYYYFVVSEGKPSKDPVVLWLNGGPGCSSFDGFVYEHGPFNFEKPKTKGTLPRLQLNPYSWSKVSNIIYLDSPAGVGFSYSKNESDYTTGDVKTASDTHAFLLKWFELYPEFLPNPLFISGESYAGVYVPTLADEIVKGIEANTTPKLNFKGYMVGNAVTDEEFDGNAIVPFAYGMGLISDELFGEITKQCSGKFYDPVNAKCKEMLSKFDGDVGGVNIYDILEPCYHDEETEKNKSSYHKLPISFRQLGKTDRPMPVRKRMFGRAWPLRAPVKDGIVPTWPQLSNDPSVPCTDDEVATLWLNNPEVRRAIHTVEKNVVSDWQLCTDQIEYNHDTGSMIKYHEKLTSKGYRALIYSGDHDMCVPFTGSRAWTSSLGYKIVDEWRPWSINDQVAGYIQGYEKNLTFLTIKGAGHTVPEYKPQEALYFYQRFMAGLPL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5060g00004 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 127 IPR001563 GO:0004185|GO:0006508
Gabi5060g00004 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 128 138 IPR001563 GO:0004185|GO:0006508
Gabi5060g00004 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 163 188 IPR001563 GO:0004185|GO:0006508
Gabi5060g00004 494 PRINTS Carboxypeptidase C serine protease (S10) family signature 461 474 IPR001563 GO:0004185|GO:0006508
Gabi5060g00004 494 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 32 478 IPR001563 GO:0004185|GO:0006508
Gabi5060g00004 494 ProSitePatterns Serine carboxypeptidases, serine active site. 177 184 IPR018202 GO:0004185
Gabi5060g00004 494 FunFam Carboxypeptidase 349 493 - -
Gabi5060g00004 494 SUPERFAMILY alpha/beta-Hydrolases 30 493 IPR029058 -
Gabi5060g00004 494 Gene3D alpha/beta hydrolase 22 307 IPR029058 -
Gabi5060g00004 494 Gene3D - 347 493 - -
Gabi5060g00004 494 FunFam Carboxypeptidase 396 491 - -
Gabi5060g00004 494 Pfam Serine carboxypeptidase 34 490 IPR001563 GO:0004185|GO:0006508
Gabi5060g00004 494 FunFam Carboxypeptidase 23 307 - -
Gabi5060g00004 494 ProSitePatterns Serine carboxypeptidases, histidine active site. 461 478 IPR033124 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5060g00004 Gabi-Chr5060 70057 75753 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5060g00004 355 494 Calmodulin-binding Proteins AT2G22960 47.857 5.69e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5060g00004 K16296 - gmx:100792057 793.112