Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5060g00002 ATGTATGTGACTGTGGATGAAAGTCATGGAAGGGACTTGTATTACTATTTTGTTGTATCTGAAGGTAAACCATCTCAGGACCCAGTGGTTCTATGGCTTAATGGTGGACCAGGGTGCTCTAGCTTGGATGGCTTTGTATATGAGCATGGTCCTTTTAATTTTGAAAAACCAAAGACTAAGGGAACCCTGCCAAGGTTGCAACTCAATCCATACAGCTGGTCAAAGGTTTCCAACATTATATATTTGGATTCTCCTGCTGGAGTGGGGTTTTCATACTCAAAGAATAAATCTGATTACACTACTGGAGATGTAAAGACAGCCTCTGATACACATACTTTTCTCCTCAAGTGGTTTGAACTATACCCTGAGTTCCTTCCCAACCCACTCTTCATTTCTGGAGAGTCCTATGCTGGAGTTTATGTGCCTACTCTTGCTGATGAAATAGTCAAAGGAATTGAAGCTAACACAACGCCCAAACTAAATTTCAAGGGCTACATGGTTGGAAATGCTGTTACAGATGAAGAATTTGATGGCAATGCTATTGTTCCATTTGCATATGGGATGGGTCTTATCAGTATTGAAATGTTTGGGGAGATCACAAAACAATGCAGTGGGAAATTCTATGATCCAGTCAACGCAAATTGCAAAAAAATGTTGTCAAAATTTGATGAGGACATTGGTGGGGTAAACATATATGACATTCTGGAACCATGCTATCATGATGAAGAGACAGAAAAGAATAAAAGATCCTATCATAAGTTGCCAATTAGCTTTAGGCAACTGGGTCAAACTGATAGACCTATGCCTGTGAGAAAAAGAATGTTTGGTCGTGGTTGGCCCTTAAGAGCTCCTGTGAAAGATGGAATTGTACCAACTTGGCCACAACTGAGCAATGACATCCCTGCTCCATGCGATGATGATGATGAGGTTGCAACCTTATGGCTGAACAATCCTGAGGTCAGGAGAGCAATCCACACAGTAGAGAAAAATGTGGTCAGTGATTGGCAATTATGTACCGACCTTGAATACAATCATGATACTGGGAGTATGATCAAGTACCATAAGAAACTAACTTCCAAAGGATATCGAGCACTTATATACAGTGGTGATCATGACATGTGTGTCCCATTTACTGGAAGCCGAGCATGGACTAGTTCACTTGGATACAAGATTGTTGATGAATGGAGACCTTGGTCAATCAATGATCAAGTTGCTGGGTATATACAAGGATATGAAAAAAATCTTACTTTTCTCACGATAAAGGGAGCTGGGCATACTGTTCCAGAATATAAACCACAGGAGGCATTGTATTTTTACCAACGTTTTATGGCTGGACTGCCTCTATAA 1347 0.4053 MYVTVDESHGRDLYYYFVVSEGKPSQDPVVLWLNGGPGCSSLDGFVYEHGPFNFEKPKTKGTLPRLQLNPYSWSKVSNIIYLDSPAGVGFSYSKNKSDYTTGDVKTASDTHTFLLKWFELYPEFLPNPLFISGESYAGVYVPTLADEIVKGIEANTTPKLNFKGYMVGNAVTDEEFDGNAIVPFAYGMGLISIEMFGEITKQCSGKFYDPVNANCKKMLSKFDEDIGGVNIYDILEPCYHDEETEKNKRSYHKLPISFRQLGQTDRPMPVRKRMFGRGWPLRAPVKDGIVPTWPQLSNDIPAPCDDDDEVATLWLNNPEVRRAIHTVEKNVVSDWQLCTDLEYNHDTGSMIKYHKKLTSKGYRALIYSGDHDMCVPFTGSRAWTSSLGYKIVDEWRPWSINDQVAGYIQGYEKNLTFLTIKGAGHTVPEYKPQEALYFYQRFMAGLPL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5060g00002 448 ProSitePatterns Serine carboxypeptidases, serine active site. 131 138 IPR018202 GO:0004185
Gabi5060g00002 448 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 2 432 IPR001563 GO:0004185|GO:0006508
Gabi5060g00002 448 FunFam Carboxypeptidase 1 261 - -
Gabi5060g00002 448 SUPERFAMILY alpha/beta-Hydrolases 2 447 IPR029058 -
Gabi5060g00002 448 Pfam Serine carboxypeptidase 2 444 IPR001563 GO:0004185|GO:0006508
Gabi5060g00002 448 Gene3D alpha/beta hydrolase 2 446 IPR029058 -
Gabi5060g00002 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 142 IPR001563 GO:0004185|GO:0006508
Gabi5060g00002 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 69 81 IPR001563 GO:0004185|GO:0006508
Gabi5060g00002 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 82 92 IPR001563 GO:0004185|GO:0006508
Gabi5060g00002 448 PRINTS Carboxypeptidase C serine protease (S10) family signature 415 428 IPR001563 GO:0004185|GO:0006508
Gabi5060g00002 448 FunFam Carboxypeptidase 350 445 - -
Gabi5060g00002 448 ProSitePatterns Serine carboxypeptidases, histidine active site. 415 432 IPR033124 GO:0004185
Gabi5060g00002 448 FunFam Carboxypeptidase 303 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5060g00002 Gabi-Chr5060 15119 20372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5060g00002 310 448 Calmodulin-binding Proteins AT2G22960 47.143 1.46e-39 139