Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5057g00006 ATGGCGGCATTGTCGTTTTCAGTGGTATCCGTGGTGGAGGATGTGCTTCAACAGCATGGTACTCGTCTCCAAGATCTTGATTTGGAATCTAGAAAAGCAGAAGAAGCTGCATTCAGAAGGTATGAAGCAGCAGGGTGGCTAAGAAAAATGGTTGGAGTTGTTGCGGCTAAAGATTTACCAGCAGAACCCTCTGAGGAAGGGTTTAGGCTTGGTTTGAGAAGTGGTATCATCCTCTGTAATGTTCTTAACAAGGTTCAACCTGGTGCTGTACCCAAGGTTGTCGAGAGTCCTGTTGATTCTGCACTTATCCCTGATGGAGCACCATTATCGGCATTTCAGTATTTCGAAAATGTGAGGAATTTTCTGGTGGCTGTCCAGGAAATTGGAATTCCTACCTTTGAGGCATCTGATCTGGAACAAGGAGGGAAATCAGCCAGGATTGTGAACAGCGTCTTGGCCGTTAAATCCTATAGTGAATGGAAACAGTCTGGGGCTAATGGTATGTGGAAATTTGGAGGAACTATCAAACCCACAATGTCTGCAAAATCTTTTGCGAGAAAAAACTCAGAGCCATTTACTAATTCCTTGTCAAGGAACTCATCCATCGATGAAAAATCTTTGACTGCTTTTACCCCGGATGTTGAATCTAATAAAATGTCTGGTTCTCATTCTTTGAGTATGCTTGTTCGTGCAATACTATATGATAAGAAGCCAGAAGAAGTACCAAAGTTGGTTGAATCCGTCTTGAATAAGGTTGTAGAGGAGTTTGAGCATCGCATTGCAAGCCAGGGTGAACAGACGAAAATAACTTTAACAGATGCTGTGTCTCAAAGCAATGGATCTGTATCGAAGTTTGTTGGGGCAAATAAAAAGTTGGATAACAAGATTCCTATGGTAACAAAGAAAGAGAAGTTCATCCATAAAAACCGTGTTGCTGATGAGGAATCACAAAGGCAACTTCTGAAGCACAAAATGCTCTTTGACCAACAGCAAAGAGATATTCAAGAACTAAAGCATACAATTCACATCACAAAAGCTGGTATGCAGTTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATCTAGGCACACACATTCATGGCTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTTGAAGAAAATCGCAAACTATACAATCAAGTCCAGGATCTTAAGGGAAGTATTAGGGTGTATTGTCGAGTAAGACCCTTCTTACCTGGACAACCAAATAATTTTAGCACAGTGGATAATATAGAAGATGGAACTATCACAATTAATATTCCATCAAAGAATGCGAAAGGGCGCAGATCCTTCAACTTCAACAAAGTCTTTGGACCATCTGCAGCCCAAGCGGAGGTCTTCTCTGACATGCAGCCACTCATTAGGTCTGTTCTTGATGGTTATAATGTTTGCATATTTGCTTACGGCCAAACAGGATCAGGAAAAACTTTCACTATGACTGGACCAAAAGAGATCACAGAAAAAAGCCAAGGTGTAAATTACAGGGCTCTAAGTGATTTGTTTCTTACAGCAGATCAAAGAAAGGACACTTTTCGCTATGATGTGTCTGTTCAAATGATTGAGATATATAATGAGCAAGTCAGAGATCTATTGGTTACTGATGGAACAAACAAAAGATTAGAAATTCGTAGTAATTCTTATAGAGGGCTCAGTGTACCAGATGCAAGCCTTGTCCCAGTATCATCAACAAATGATGTTATTGAATTAATGAACCTGGGCCAAAGGAACCGTGCAGTAGGAGCAACAGCCCTTAATGATCGTAGTAGCCGATCTCACAGTTGCTTGACGGTTCATATTCAAGGAAGAGACTTGACATCTGGAACTGTCCTACGTGGATGCATGCATCTGGTTGACCTGGCAGGAAGTGAGAGAGTTGACAAATCTGAGGCAACGGGAGACAGACTAAAGGAGGCACAGCATATTAACAAATCTCTTTCAGCTTTGGGTGATGTCATTGCTTCCCTTGCTCAGAAAAACCAACATGTCCCTTACAGAAATAGCAAACTCACACAATTACTCCAAGATTCACTTGGAGGACAGGCCAAGACACTAATGTTTGTTCACATAAGTCCAGAGGTCAATGCTATTGGAGAAACAATAAGCACCTTAAAATTTGCAGAAAGAGTTGCTACAGTTGAACTTGGTGCTGCTCGAGTAAACAAGGATGGTTCAGATGTCAAAGAGCTCAAAGGACAAATCGCCAGCCTTAAGGCAGCATTGGCAAGAAAAGAAGAGGGGGAATCAGAACATTCTTTATCTGGCAGCGCTGGAAAATATAGGACAACTAGTGAGCTATCACCTTATCATGCAAACCAGAGGGGGGCAGATATTATGGGTGATCCCCTTGTGTGCCGGCAACCAATGGTTGATGTAGGCAACATAGAGCTTCACAGTAATACCACATTGAGGCAAAAAACTCAGAGCTTTGATTTTGATGAGATATCAGCAAATTCACCACCATGGCCCCCGGTGAATAGTCCTGGACAAAACTATGGGGAAGATGATAAAGAAACTGGTTGTGGAGAGTGGGTTGATAAGGTCATGGTGAACAAACAAGATGTAAACAAAACTGAAAACATCTTAGGGTGTTGGGAGGCAGACAATGGGAACTTATCCGAGGTCTTTTATAAGAAATATCTCCAAGATTCTTCTAAAATATACTCAGAACAATCCTACAATACATTCATGGGAAGCAACCAGTTTAACGTTGCTGGTTCAGATGAAATGGATGATCTTGATGCCGCAACCAGTGATTCCTCGGAACCTGACGTACTTTGGCAATTTAATCATTCCAAACTTGCCAGCGTAGCCAATGGAAATGAATCAAAATCTAGGAGACCTGTCTCAAAGTCAGCCAAAAACCCAGAATTGAGCAAGAATATTATTCATTCTTCTCTTGGTCCTTCACCTTCACGGAAACAATCAAATGCTGTCTCACATCGAACAGGAAGACATCCAGCTCCAGTTGAAATGAAACGTAAAACTGGTAATAGAAAGTGA 3027 0.4149 MAALSFSVVSVVEDVLQQHGTRLQDLDLESRKAEEAAFRRYEAAGWLRKMVGVVAAKDLPAEPSEEGFRLGLRSGIILCNVLNKVQPGAVPKVVESPVDSALIPDGAPLSAFQYFENVRNFLVAVQEIGIPTFEASDLEQGGKSARIVNSVLAVKSYSEWKQSGANGMWKFGGTIKPTMSAKSFARKNSEPFTNSLSRNSSIDEKSLTAFTPDVESNKMSGSHSLSMLVRAILYDKKPEEVPKLVESVLNKVVEEFEHRIASQGEQTKITLTDAVSQSNGSVSKFVGANKKLDNKIPMVTKKEKFIHKNRVADEESQRQLLKHKMLFDQQQRDIQELKHTIHITKAGMQFMQMKFHEEFSNLGTHIHGLAHAASGYHRVLEENRKLYNQVQDLKGSIRVYCRVRPFLPGQPNNFSTVDNIEDGTITINIPSKNAKGRRSFNFNKVFGPSAAQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTFTMTGPKEITEKSQGVNYRALSDLFLTADQRKDTFRYDVSVQMIEIYNEQVRDLLVTDGTNKRLEIRSNSYRGLSVPDASLVPVSSTNDVIELMNLGQRNRAVGATALNDRSSRSHSCLTVHIQGRDLTSGTVLRGCMHLVDLAGSERVDKSEATGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPEVNAIGETISTLKFAERVATVELGAARVNKDGSDVKELKGQIASLKAALARKEEGESEHSLSGSAGKYRTTSELSPYHANQRGADIMGDPLVCRQPMVDVGNIELHSNTTLRQKTQSFDFDEISANSPPWPPVNSPGQNYGEDDKETGCGEWVDKVMVNKQDVNKTENILGCWEADNGNLSEVFYKKYLQDSSKIYSEQSYNTFMGSNQFNVAGSDEMDDLDAATSDSSEPDVLWQFNHSKLASVANGNESKSRRPVSKSAKNPELSKNIIHSSLGPSPSRKQSNAVSHRTGRHPAPVEMKRKTGNRK 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5057g00006 1008 Pfam Calponin homology (CH) domain 40 157 IPR001715 GO:0005515
Gabi5057g00006 1008 SMART kinesin_4 394 729 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi5057g00006 1008 FunFam Kinesin-like protein KIN-14I isoform A 24 176 - -
Gabi5057g00006 1008 PRINTS Kinesin heavy chain signature 469 490 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi5057g00006 1008 PRINTS Kinesin heavy chain signature 591 608 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi5057g00006 1008 PRINTS Kinesin heavy chain signature 671 692 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi5057g00006 1008 PRINTS Kinesin heavy chain signature 622 640 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi5057g00006 1008 Pfam Kinesin motor domain 402 720 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi5057g00006 1008 MobiDBLite consensus disorder prediction 825 844 - -
Gabi5057g00006 1008 MobiDBLite consensus disorder prediction 994 1008 - -
Gabi5057g00006 1008 SUPERFAMILY Calponin-homology domain, CH-domain 40 170 IPR036872 -
Gabi5057g00006 1008 FunFam Kinesin-like protein KIN-14I isoform A 391 764 - -
Gabi5057g00006 1008 ProSiteProfiles Kinesin motor domain profile. 396 721 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Gabi5057g00006 1008 ProSiteProfiles Calponin homology (CH) domain profile. 37 159 IPR001715 GO:0005515
Gabi5057g00006 1008 Coils Coil 16 36 - -
Gabi5057g00006 1008 Gene3D Kinesin motor domain 339 723 IPR036961 -
Gabi5057g00006 1008 MobiDBLite consensus disorder prediction 750 776 - -
Gabi5057g00006 1008 Gene3D - 24 189 IPR036872 -
Gabi5057g00006 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 396 754 IPR027417 -
Gabi5057g00006 1008 Coils Coil 735 755 - -
Gabi5057g00006 1008 MobiDBLite consensus disorder prediction 946 1008 - -
Gabi5057g00006 1008 CDD CH_AtKIN14-like 39 156 - -
Gabi5057g00006 1008 CDD KISc_C_terminal 394 723 - -
Gabi5057g00006 1008 PANTHER KINESIN-LIKE PROTEIN KLP-3 44 939 IPR027640 GO:0003777|GO:0007018
Gabi5057g00006 1008 MobiDBLite consensus disorder prediction 962 990 - -
Gabi5057g00006 1008 SMART ch_5 39 157 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5057g00006 Gabi-Chr5057 98181 104136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5057g00006 384 721 Calmodulin-binding Proteins AT5G65930 43.314 5.61e-79 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5057g00006 K10406 - gmx:100801279 1734.15