Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5053g00016 ATGGCATTTTCATTCATACTTATGTTGCAGTTCTTGCTTCTTGCCCCAACTTTGATCTCTCCTTCTCCAGTTCAAGATCCTGAATCAGTGGTCCAGGAAGTACAGAAGAGCATCAATGAGCAAAGGAGAAATTTGGGTTTCTATTCTTGTGGAACTGGCAACCCCATTGATGATTGTTGGAGATGTGACCCCAACTGGGAAAGGAACCGCAAGAGTCTAGCCGATTGTGCTATTGGGTTTGGCAAAAATGCCATTGGTGGCAGAGATGGCAAAGTATATATGGTCACTGACCCAAATGATCACCCTTTGAACCCAGAGCCAGGTACTCTAAGATTTGGTGTTATCCAAGAAGAGCCTTTGTGGATCATTTTCAAACATGACATGGTTATCAAGCTAGACATGGATCTTCTTATGAATTCTTACAAAACCATTGATGGACGAGGAACAAATGTCCACATTGCTGGAGGGCCTTGCATTAAAGTACAACACAAGACCAACATCATAATTCATGGCTTGCACATCCATGATTGCAAACGAGGTGGCAGTGGCTACGTGAGTGACTCTCCTAGCCATCGTAGATGGAGATCAAGATCGGATGGTGATGGGGTAACAATCTTTGGTGGGAGCCATGTTTGGGTGGACCATTGCTCCTTATCAAATTGTTATGATGGCCTAATTGATGTTGTTCATGGGTCAACGGCTATCACTATTTCCAACAATTACATGACACACCATAACAAAGTTATGCTATTGGGCCACAGTGATTCCTATAAAGGGGACAAGAATATGCAAGTTACCATAGCCTTCAACCATTTTGGAGAAGGACTTGGAGGAAGAATGCCAAGATGCAGGTATGGATACTTCCATGTGGTGAATAATGATTACACCCATTGGCAACATTACGCAATAGGTGGGAGTTCATCCCCAACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAGATGATGAATACCACAAAGAGGTCACCAAACACTTTCGTTCATCAGATAGTATGTGGAAGAAATGGAATTGGAGGTCTGAAGGAGATTTAATGTTGAATGGTGCCTTCTTCACACCATCTGGAGCTGGAGCATCTTCTATGTATGATAAGGCATCAAGCATGGCAGCACGACCACCTACACTTGTTCCTTCAATAACAGAAGGAGCTGGAGTGCTTAGATGCGTAAAGGGCTACCTCTGCTAG 1206 0.4353 MAFSFILMLQFLLLAPTLISPSPVQDPESVVQEVQKSINEQRRNLGFYSCGTGNPIDDCWRCDPNWERNRKSLADCAIGFGKNAIGGRDGKVYMVTDPNDHPLNPEPGTLRFGVIQEEPLWIIFKHDMVIKLDMDLLMNSYKTIDGRGTNVHIAGGPCIKVQHKTNIIIHGLHIHDCKRGGSGYVSDSPSHRRWRSRSDGDGVTIFGGSHVWVDHCSLSNCYDGLIDVVHGSTAITISNNYMTHHNKVMLLGHSDSYKGDKNMQVTIAFNHFGEGLGGRMPRCRYGYFHVVNNDYTHWQHYAIGGSSSPTIFSQGNRFLAPDDEYHKEVTKHFRSSDSMWKKWNWRSEGDLMLNGAFFTPSGAGASSMYDKASSMAARPPTLVPSITEGAGVLRCVKGYLC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5053g00016 401 Gene3D - 53 394 IPR012334 -
Gabi5053g00016 401 Pfam Pectate lyase 138 318 IPR002022 -
Gabi5053g00016 401 PANTHER PECTATE LYASE 18-RELATED 25 398 IPR045032 GO:0030570
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Gabi5053g00016 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Gabi5053g00016 401 SMART amb_all 127 324 IPR002022 -
Gabi5053g00016 401 SUPERFAMILY Pectin lyase-like 39 394 IPR011050 -
Gabi5053g00016 401 FunFam Pectate lyase 53 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5053g00016 Gabi-Chr5053 119553 121923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5053g00016 3 401 Polysaccharide Lyase AT5G63180 70.792 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5053g00016 K01728 - gmx:100801136 726.857