Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5053g00001 ATGGGTGAAACCGGTATCGTTGTCCGGTTCCCGGGAAACTTAGACCCAAGAGCTGAGGAGTTCAGACCCACAAACATCATTCAACATCAACCGGCAACCGTTTTCCCACAACCTTATCCATGTCCGTACGCACCGTTGCCCGTGGCCGTTGGAGTTCCGTTCACTCACTTCACTGCTTACGTCACCCCGCCGGCGCAGGTGTCCACGTCACCAACCCGGTCGCTGCTGCTGAGTCCCGTTCCCATCATCATTAGCGAGTCAGCGTTGAGGATGGAACTCGAGGTGTTCGGTGACGTCAGAGGAATCCAGATGGACGGTCTCCGTGATGGAACCGTTACCGTTCATTTCTACGACCTCAGGCATGCAGAGACGGCGTTAACGGCGATTCGCAGACAGCACATGCAGCACCAGACCAGGCTCCGCAACCACTACGCTTCTTTCTTCAAGACCCTCAACCCTGAATTCTACGCCGCCGCACCACCACCGCTTCCTCCGCCGGCGCGTGGGCTTATATCCGGTCGTGTCGTGTGGGCCCAGTACGTCCAACCCGCTTGCAATGCCGTCCCCGACGGTCAGAACCAAGGGACACTCGTGATTTTCAATTTGGACATGGAGGTGTCCACTGAGAATCTCCGACAAGTTTTTAAGGCTTTTGGTGCCATAAAGGAATTGAGAGATACACCATGGAAAAAGAATCAAAGATTCGTGGAGTTTTTTGACATAAGAGACGCAGCAAAGGCATTGAAAGAGATGAATGGCAAGGAAATTAATGGAAAACAAGTTGTTATTGAGTTTAGTAGACCAGGTGGTCACACCAGAAAGTTTTTCCATTCTTCACCACACTCTACAATCTCCAAAAAGCCTCTTAATTTCAATATCCCATCTCCACCATCACCATCACCACGTGCTGCTTCTTCCCCTCGACGTCGTTTTGCTGGTTCTCGCTTGCATTCCTCTCATCAACCACAATTATCTTACAAGAAATCTGCTGTTGACCAGAACAAGATTTCAGATTCTGGTTCTATTGATGCATCAATCACGAAGCAACAACAACAACAACTACCTAGAAGTAATAGGAATTGGAAGGGAAAGCAAGCAAAGAAGCTTGAAACTCGGTTCTTAATCAAAGAAGATGCCATTGTTGAGTCCACTTCCAGAGATTCTAGAACTACTGTAATGATCAAGAACATACCCAACAAATACAGTCAGAAGCTACTGTTAAACATGCTGGACAACCACTGCATACACTGCAACGAGCAGATTGGCGATGATGATGACCAGCCTTTATCCTCCTACGACTTCGTGTACCTTCCCATTGATTTCAACAACAAGTGCAATGTGGGATATGGGTTTGTGAACATGACATCTCCGGAGGCAACACTGAGGCTCTATAAGGCCTTCCATCTTCAACATTGGGAGGTATTTAATTCAAGAAAAATTTGCGAAGTCACCTACGCGAGAGTTCAGGGTTTGGAAGCTTTGAAAGAGCACTTTAAGAACTCAAAGTTCCCATGCGAGATGGAGCATTACCTGCCAGTGGTGTTTTCACCGCCTCGAGACGGTGGTAGGGAACTGACGGAGCCACTTCCAATTGTGGGGAACAAGCAGCAAACAATTGGTGTGACAAATATTTCAAATGGTGTTGGTTGTGATGAGATGGAGGGTGGTGATAGGGATGATAGGGTAGGTGGTGGTGTTTCTGCTTGTGATGACGTGGCTAGCAGCAAAAGTGGCGGCGTGAGTAGTGATGATGACACAAGGGAAGTGGGTGGTGGAGGCATGCTCTCTTCTGAAGTGTGTAGCGTAGTTGACTAG 1815 0.4837 MGETGIVVRFPGNLDPRAEEFRPTNIIQHQPATVFPQPYPCPYAPLPVAVGVPFTHFTAYVTPPAQVSTSPTRSLLLSPVPIIISESALRMELEVFGDVRGIQMDGLRDGTVTVHFYDLRHAETALTAIRRQHMQHQTRLRNHYASFFKTLNPEFYAAAPPPLPPPARGLISGRVVWAQYVQPACNAVPDGQNQGTLVIFNLDMEVSTENLRQVFKAFGAIKELRDTPWKKNQRFVEFFDIRDAAKALKEMNGKEINGKQVVIEFSRPGGHTRKFFHSSPHSTISKKPLNFNIPSPPSPSPRAASSPRRRFAGSRLHSSHQPQLSYKKSAVDQNKISDSGSIDASITKQQQQQLPRSNRNWKGKQAKKLETRFLIKEDAIVESTSRDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGDDDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKAFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEMEHYLPVVFSPPRDGGRELTEPLPIVGNKQQTIGVTNISNGVGCDEMEGGDRDDRVGGGVSACDDVASSKSGGVSSDDDTREVGGGGMLSSEVCSVVD 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5053g00001 604 SMART rrm1_1 196 264 IPR000504 GO:0003723
Gabi5053g00001 604 SMART rrm1_1 74 141 IPR000504 GO:0003723
Gabi5053g00001 604 MobiDBLite consensus disorder prediction 316 360 - -
Gabi5053g00001 604 MobiDBLite consensus disorder prediction 276 291 - -
Gabi5053g00001 604 SUPERFAMILY RNA-binding domain, RBD 196 467 IPR035979 GO:0003676
Gabi5053g00001 604 CDD RRM3_EAR1_like 389 490 IPR034458 -
Gabi5053g00001 604 Gene3D - 189 275 IPR012677 -
Gabi5053g00001 604 MobiDBLite consensus disorder prediction 272 364 - -
Gabi5053g00001 604 MobiDBLite consensus disorder prediction 554 604 - -
Gabi5053g00001 604 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 261 IPR000504 GO:0003723
Gabi5053g00001 604 SUPERFAMILY RNA-binding domain, RBD 62 136 IPR035979 GO:0003676
Gabi5053g00001 604 Pfam RNA recognition motif 2 389 499 IPR007201 -
Gabi5053g00001 604 Gene3D - 333 494 IPR012677 -
Gabi5053g00001 604 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 268 IPR000504 GO:0003723
Gabi5053g00001 604 PANTHER RNA RECOGNITION MOTIF-CONTAINING 385 515 - -
Gabi5053g00001 604 FunFam Protein MEI2-like 1 194 288 - -
Gabi5053g00001 604 FunFam Terminal EAR1-like 1 337 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5053g00001 Gabi-Chr5053 20282 23323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5053g00001 190 267 Eukaryotic Initiation Factors Gene Family AT2G23350 37.805 8.18e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5053g00001 - - adu:107469016 716.072