Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5052g00004 ATGTCAGCTAACAGTTCGTTGAATGTGGAATTGTCCAAGAAGACTTCGTTTTTGGGTTTGAGACTGTGGGTTTTGATTGGGATAGGTGTTGGTGGGTTTATAGTTCTAATTCTTTGTATATTATCTATATGGGTGATGTTTCGGAGAAAGTCTAGGAGATCTCTAGACAAGTACTCTTTATCACAAATACCACATGTCTCAAAAGATATCATAGTTGACAAGGTTGGGGTGCAAACTTCTCATGATCAAGCAGAAAGTGTATCTATTCCTGTTCATGACAAGGCAAGTGATAAGAATTCAGAAAAGTTGTTAGTTCATTTAGGCATGAGCAAATCCAGTGATCCTGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCAATGTCAGGGGAAGAAGGAAGCTCTGGGACTGTTAAGAAGCAGTCTACATTGTCACTTGGAGGGATGGTAACTGCCTCTCCTCTAATTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACGCTTAGAGATCTGGAACTTGCAACTAAGCGTTTCTCTGCAGAGAATGTGATTGGTGAGGGTGGATATGGAGTTGTTTATAGGGGCAGACTAATTAATGGATCTGAGGTGGCGGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAAAATCTTGTGCGTTTACTTGGATATTGCATAGAAGGAGTTCACAGGTTGCTGGTATATGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGCTATGAGCCAACATGGGATACTCACTTGGGAAGCCCGGATGAAAGTTATACTTGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATAATGATTTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACTAGAGTGATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATACGGGTTTGTTAAATGAGAAGAGTGACATTTATAGCTTTGGTGTTCTCCTGCTGGAAGCTGTCACTGGAAGGGACCCTGTAGACTATACGCGTCCTGCTAATGAGGTGAATCTTGTTGAGTGGCTTAAGATGATGGTGGGGACAAGGAGGGCAGAGGAAGTTGTAGACTCGAGCCTTGAAGTGAAACCATCAATACGTGCTTTAAAGCGTGCCCTTCTGGTTGCACTTAGGTGTGTTGATCCTGATGCAGACAAGAGGCCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGATGAATATCCATTCCGAGAGGATCGAAGGAATAGGAAGAGCCGCACTGCCAGCATGGAAATTGAATCTCTGAAGGATGCTTGTGGTCCATCTGATGCTGAAAAGGTGAAGGTTTCTGAAGGCTATGTACCTGAGACAACAACTCAAGGGTAG 1536 0.4251 MSANSSLNVELSKKTSFLGLRLWVLIGIGVGGFIVLILCILSIWVMFRRKSRRSLDKYSLSQIPHVSKDIIVDKVGVQTSHDQAESVSIPVHDKASDKNSEKLLVHLGMSKSSDPDNISQCSSIYHHERGFSSMSGEEGSSGTVKKQSTLSLGGMVTASPLIGLPEISHLGWGHWFTLRDLELATKRFSAENVIGEGGYGVVYRGRLINGSEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGAMSQHGILTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDNDFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYTRPANEVNLVEWLKMMVGTRRAEEVVDSSLEVKPSIRALKRALLVALRCVDPDADKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDACGPSDAEKVKVSEGYVPETTTQG 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5052g00004 511 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Gabi5052g00004 511 CDD STKc_IRAK 194 460 - -
Gabi5052g00004 511 Pfam Protein kinase domain 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5052g00004 511 PANTHER OS01G0323000 PROTEIN 1 482 - -
Gabi5052g00004 511 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5052g00004 511 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Gabi5052g00004 511 Coils Coil 208 228 - -
Gabi5052g00004 511 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
Gabi5052g00004 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Gabi5052g00004 511 MobiDBLite consensus disorder prediction 466 511 - -
Gabi5052g00004 511 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5052g00004 511 MobiDBLite consensus disorder prediction 466 481 - -
Gabi5052g00004 511 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Gabi5052g00004 511 FunFam Putative receptor-like protein kinase 170 263 - -
Gabi5052g00004 511 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5052g00004 Gabi-Chr5052 36963 45451 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5052g00004 5 462 Trihelix Transcription Factor Family AT1G70460 39.224 1.08e-94 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gabi5052g00004 Pkinase 4.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5052g00004 - - gmx:100813931 872.848