Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5050g00006 ATGAAGAGGTCTCCTACATCTTCGAGTTCATCATCATCTTCATCTGTTGGGGTTGAAACTGATCTCATTCAATCAGAGAATAAAAGTCCTAAGCATAAAAAAGAGAGTCCCAATTCACCGAAATGTAAGCAGAACCAAACCACAGCTGGTGGCAGAAGAAGCTCCATTTACAGAGGAGTTACCAGGCATAGGTGGACAGGGAGGTTTGAAGCTCATTTATGGGACAAGACTTCTTGGAACAGCATTCAGAACAAGAAGGGACGACAAGTTTATTTGGGGGCATATGAATCTGAAGAAGCTGCAGCTCGTACCTATGATCTTGCAGCCCTTAAGTATTGGGGAAAGAAGGCAACCTTGAATTTCCCGATAGAAACATATACCAAAGACATTGAGGAAATGGAGAAGACCACAAAAGAAGAATACCTGGCTTCTTTGCGGCGGCAAAGCAGTGGCTTTTCTAGGGGCGTTTCTAAGTATCGTGGGGTGGCTAGGCATCACCATAATGGTCGCTGGGAAGCTCGCATTGGAAGAGTATCTGGTAACAAGTACATCTACTTGGGGACATATAAAACTCAAGAGGAGGCAGCTATGGCATATGATATGGCAGCAATAGAGTACAGAGGAATCAAAGCAGTGACAAATTTTGATATAAGCAAATATACTGACAAAATAAAGAAGAAAAATGACCCATCGCAACAAACAGAACCAGTAACAGAAATAGCTCATAACTCCTCTGATTCTGAAGAGACACAGGTAGAACCAACAATTGCATCCCCACCTGAAAATCTGCCCCAGCAACAACAGGAACAGCAGCAACAAGTTCAACAGAACCATATCCCTCTAAGTGAGGAATCATCACTAGTAGCTGTTATGGACAATATCCTTGAGCAGGACTTACCATGGAGCTGTCTGTATAATGGGTTATTTCCCATTCAAGACCCAGACTTGGCTTTCAGCAAATCTGAGGATTTAATGGACATGTTTGATGATGCAGGCTTTGAGGAAGATATTGATGTTCTGTTAAACACAGAACCTGCTGATAGTGATATCAATACGATTGCAGTTTTGAATAGTATTGAAGGCGGAGTTACCGATGTAGCTGCTAATAAGGAGGAGAAGATATTATCCTTAACTTCACCATCATCTACAACAGCTACAGTTTCTTGA 1167 0.4207 MKRSPTSSSSSSSSSVGVETDLIQSENKSPKHKKESPNSPKCKQNQTTAGGRRSSIYRGVTRHRWTGRFEAHLWDKTSWNSIQNKKGRQVYLGAYESEEAAARTYDLAALKYWGKKATLNFPIETYTKDIEEMEKTTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVSGNKYIYLGTYKTQEEAAMAYDMAAIEYRGIKAVTNFDISKYTDKIKKKNDPSQQTEPVTEIAHNSSDSEETQVEPTIASPPENLPQQQQEQQQQVQQNHIPLSEESSLVAVMDNILEQDLPWSCLYNGLFPIQDPDLAFSKSEDLMDMFDDAGFEEDIDVLLNTEPADSDINTIAVLNSIEGGVTDVAANKEEKILSLTSPSSTTATVS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5050g00006 388 PRINTS Ethylene responsive element binding protein signature 198 218 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 271 - -
Gabi5050g00006 388 MobiDBLite consensus disorder prediction 233 278 - -
Gabi5050g00006 388 MobiDBLite consensus disorder prediction 1 54 - -
Gabi5050g00006 388 MobiDBLite consensus disorder prediction 25 39 - -
Gabi5050g00006 388 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700|GO:0006355
Gabi5050g00006 388 Gene3D AP2/ERF domain 56 124 IPR036955 GO:0003700|GO:0006355
Gabi5050g00006 388 SUPERFAMILY DNA-binding domain 55 124 IPR016177 GO:0003677
Gabi5050g00006 388 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677
Gabi5050g00006 388 CDD AP2 157 218 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 Pfam AP2 domain 56 114 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 Pfam AP2 domain 157 208 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 MobiDBLite consensus disorder prediction 1 24 - -
Gabi5050g00006 388 ProSiteProfiles AP2/ERF domain profile. 56 122 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 FunFam AP2-like ethylene-responsive transcription factor 55 124 - -
Gabi5050g00006 388 CDD AP2 55 123 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 SMART rav1_2 56 128 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 SMART rav1_2 158 222 IPR001471 GO:0003700|GO:0006355
Gabi5050g00006 388 MobiDBLite consensus disorder prediction 40 54 - -
Gabi5050g00006 388 MobiDBLite consensus disorder prediction 224 278 - -
Gabi5050g00006 388 FunFam AP2-like ethylene-responsive transcription factor 157 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5050g00006 Gabi-Chr5050 55367 59563 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5050g00006 34 246 AP2-EREBP Transcription Factor Family AT5G57390 58.824 4.03e-86 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Gabi5050g00006 AP2 7.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5050g00006 - - gmx:100527432 496.893