Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi504g00001 TCTGCTGTAAATGATGAGGATGAGATGAGTGGCCTTCCAAATATTCAAAAAAATTCATCAAGATTGATATGGAATATGGAGACAGGATTTACTTCCAATTTTTGGGTGATACTTCAAATCTTTTATGCCCTTTCTTTTCATGTTTTGCAGGTTGTCAACTATTGGCCAGAAAAGGGAATATCTGGATTTATAGTATATAAATTTCGACTTAGGAGACTTGAAGGGCAGTCTACATTAACCACTAATCAGGTTTATTTCACTCATGGTCGCATACCTCAGTCACCTGCAGAAATACGAGGGTTGGTATGCGAGGATATCACTGGAGGTCTGGAACATCCACCCATTCCTGCTACGAATTTGGTTGATGACCCCCCTGTTCCACCCACAGGTTTCACATATTATAAGTCCGTCAAGGTTGCAAATAATGTGACGGTTCCCAAAAATGCTACTGGATGCAAATGCAAAGGCTTTTGTATTGATCCGACAACTTGTGAATGTGCATTGCTTAATGGCTCAGATTTTCCCTATGTATCTCGGGATGGTGGCAGGTTAGTTGAAGCCAAAGATGTAGTTTTTGAATGTGGCCCCAAATGTGGTTGTGGTCCTGGTTGTGTGAACCGAACTTCTGAAAGAGGACTTAGATATCGTCTGGAGGTTTTCCGTACTGCAAAGAAAGGATGGGCCGTTAGATCTTGGGATTTTATACCTTCTGGAGCCCCAGTTTCTGAGTACACAGGAATACTTGCTAGGACGGAAGATATGGAAAGTGTATTGGAAAACAATTATATTTTTGACATAGATTGCTTGCAAACAATCAAGGGGCTTGGTGGAAGAGAGAGGCGGTCAAATAATGTAGCATTTCCTGCAAATCTTTTGGACAAATGCGATGACCAAGGTTCTGAAAGTGTGCCAGAGTTTTGTATTGATGCAGGATCTACTGGAAATATTGCTAGGTTTATAAACCATTGTTGCGAGCCTAATCTATTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAAATCGGCTCGAGTAGCGTTGTTTGCTTCCGACAATATACCCCCTTTGCAGGAGCTGACATATGACTATGGCCATGCGCTTGATAGTGTCTTTGACTCCAATGGGAAGATAAAGCAAATGCCATGCTACTGTGGAGCCCCAGGCTGCAGGAAGCGATTGTTCTAA 1185 0.4194 SAVNDEDEMSGLPNIQKNSSRLIWNMETGFTSNFWVILQIFYALSFHVLQVVNYWPEKGISGFIVYKFRLRRLEGQSTLTTNQVYFTHGRIPQSPAEIRGLVCEDITGGLEHPPIPATNLVDDPPVPPTGFTYYKSVKVANNVTVPKNATGCKCKGFCIDPTTCECALLNGSDFPYVSRDGGRLVEAKDVVFECGPKCGCGPGCVNRTSERGLRYRLEVFRTAKKGWAVRSWDFIPSGAPVSEYTGILARTEDMESVLENNYIFDIDCLQTIKGLGGRERRSNNVAFPANLLDKCDDQGSESVPEFCIDAGSTGNIARFINHCCEPNLFVQCVLSTHHDLKSARVALFASDNIPPLQELTYDYGHALDSVFDSNGKIKQMPCYCGAPGCRKRLF 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi504g00001 394 Gene3D SET domain 98 394 IPR046341 -
Gabi504g00001 394 SMART preset_2 103 199 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi504g00001 394 SUPERFAMILY PUA domain-like 50 106 IPR015947 -
Gabi504g00001 394 ProSiteProfiles SET domain profile. 215 364 IPR001214 GO:0005515
Gabi504g00001 394 SMART set_7 215 370 IPR001214 GO:0005515
Gabi504g00001 394 ProSiteProfiles Post-SET domain profile. 378 394 IPR003616 -
Gabi504g00001 394 Pfam Pre-SET motif 107 207 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi504g00001 394 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 50 386 - -
Gabi504g00001 394 SMART PostSET_3 378 394 IPR003616 -
Gabi504g00001 394 ProSiteProfiles Pre-SET domain profile. 150 212 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Gabi504g00001 394 Gene3D - 48 89 IPR036987 -
Gabi504g00001 394 Pfam SET domain 226 364 IPR001214 GO:0005515
Gabi504g00001 394 SUPERFAMILY SET domain 99 371 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi504g00001 Gabi-Chr504 10353 15843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi504g00001 48 394 EF-hand Containing Proteins AT5G13960 63.429 4.30e-167 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi504g00001 SET 2.3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi504g00001 K11420 - gmx:100796701 611.298