Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5049g00008 ATGAGGAAGCCTGAGACATCTCCAAAAAACAATTCCAATAACAAGCTTAGAAAAGGGTTGTGGTCACCAGAGGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGACTGATGTGGCCAGAAATGCTGGCTTGCAAAGATGTGGCAAAAGTTGTCGGCTTCGATGGATCAATTACTTGAGGCCTGATCTTAAACGAGGCGCATTCTCACCCCAAGAAGAACAACTCATCATCCATTTCCATTCCCTTCTTGGAAACAGATGGTCTCAAATAGCGGCACGCTTACCTGGGAGAACCGACAATGAAATTAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACTTGTCATCCACAACCTCACCAAACACAAGCGAGTCCTCATATGAGCATAACAAAGACCTTAATAATATGGGAGGGTTTACTTCTATGCAAGATCATCAACATGCTGACTTTATGCCTATGTTCAGTTCATCTCCATCACCATCAGTGCAAACCACAGTTCTCAATACCATAATTGACAGGTTTCCTATAATAGAGCATGGACTAAACATGCCAGCTTTTGGTGGATTCTTCAACGGTACAGGGCCATGTTTCTCACAGAGTGGAGTTAACAGCAAAGATTTTTATTTTGAAAATAGAGTTTTTGGGAATGTAAATATTGGGGCAGAAGGGGAAATGTGTGTTCCTCCTCTAGAGAGTGTTAGCACTATTTCTGACCATAACCTGAAAGTGGAGAGTGCATGCAAAGGAGATACTAATAGCAATAGTTACTTTGATGACATAAACAGTATTATTAATAACAGCAATATTAGCAACAATAAGAGAGGTGAAATTAGAACTGGGGTGGAGAATTTGTTTCAAGAAGAGTTAAACATGGGAGAGTGGGACTTGGAGGACTTGATGAAAGATATTTCCTCCTTTCCCTTTCTTGATTTTTCAAACTGA 969 0.4004 MRKPETSPKNNSNNKLRKGLWSPEEDDKLMNYMLNSGQGCWTDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEQLIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSTTSPNTSESSYEHNKDLNNMGGFTSMQDHQHADFMPMFSSSPSPSVQTTVLNTIIDRFPIIEHGLNMPAFGGFFNGTGPCFSQSGVNSKDFYFENRVFGNVNIGAEGEMCVPPLESVSTISDHNLKVESACKGDTNSNSYFDDINSIINNSNISNNKRGEIRTGVENLFQEELNMGEWDLEDLMKDISSFPFLDFSN 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5049g00008 322 MobiDBLite consensus disorder prediction 1 20 - -
Gabi5049g00008 322 SMART sant 70 118 IPR001005 -
Gabi5049g00008 322 SMART sant 17 67 IPR001005 -
Gabi5049g00008 322 SUPERFAMILY Homeodomain-like 16 112 IPR009057 -
Gabi5049g00008 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 120 IPR017930 -
Gabi5049g00008 322 CDD SANT 21 65 IPR001005 -
Gabi5049g00008 322 PANTHER MYB DOMAIN PROTEIN 55 11 235 - -
Gabi5049g00008 322 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Gabi5049g00008 322 Gene3D - 73 144 - -
Gabi5049g00008 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 65 IPR017930 -
Gabi5049g00008 322 FunFam Transcription factor MYB46 72 141 - -
Gabi5049g00008 322 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Gabi5049g00008 322 Gene3D - 15 71 - -
Gabi5049g00008 322 CDD SANT 73 113 IPR001005 -
Gabi5049g00008 322 FunFam MYB transcription factor 15 71 - -
Gabi5049g00008 322 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
Gabi5049g00008 322 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5049g00008 Gabi-Chr5049 49411 51596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5049g00008 1 320 MYB Transcription Factor Family AT3G08500 44.225 4.26e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi5049g00008 Myb_DNA-binding 9.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5049g00008 K09422 - gmx:100786151 471.085