Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5049g00005 ATGGGAGCTCGTTGCTCTAAATTTTCTCTGTGCTGGTGGCCTTCCAATATCAAATCAAACCTTCATGACTTGTCTGATAATGATGATGGGAACAAGAATGAGAAGGATCCTTGGGCTGGTTTCACTGAGTATAACATGGATCAACTAAAACTTGCCACTTCAGGATTTTCACCTGACAACATTGTCTCTGAGCATGGTGAGAAGGCTCCAAATGTTGTTTACAGAGGAAGGCTTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCACCAAGTCTGCTTGGCCTGATTCTCGACAATTCATAGAGGAAGCACGAGCTGTGGGGCAGCTAAGGAATGGACGGTTAGCTAACTTGGTTGGGTTTTGCTGTGAAGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTTTCCAAACATCTTTTTCACTGGGAGGCCCAGCCCATGAAATGGGCAATGAGGCTGAGGGTGGCATTGTATTTAGCACAAGCTTTGGAATACTGCAGCAGTAGAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATGAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGAGATGGCAAAAGCTATAGCACAAATTTAGCCTTCACTCCTCCAGAGTACTTAAGGACAGGAAGAATCAACCCTGAAAGTGTAATTTACAGTTTTGGCACTCTATTGCTTGATCTTCTTAGTGGAAAGCATATACCACCCAGCCATGCACTTGACCTTATACGAGGAAAAAATTTTCTATTGCTGATGGATTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGCCAAGTCACTTGTGACTGCTCTAACTCCTCTTCAGAAAGATACTTCAGTACTGTCAAATGTTTTATTGGGCATACCAGATGGGAGTCTATCATCAAAGGAAACAGTTTCATTGACACCTTTTGGTGAAGCTTGTTTAAGAAGAGATCTGACCGCAATATATGAAATTTTGGGAAAGGTGGGGTACAAGGATGATGAAGATGTTGCGAATGAGCTGTCCTTCCAAATGTGGACAAATCAAATACAAGAAACACTGAATTCTAAGAAGCATGGTGACTCTGCTTTTCATGCTAGAAACTTCTCTACGGCCATTGATTGCTATACAGAATTCATCGATGGTGGAACCATGGTATCACCAACAGTGTACGCGAGGCGCTGCTTATGCTACCTGATGGATGGCATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAGTCAGTGTCTCCCACATGGCCTACTGCATTCTATCTTCAAGCAGTTGCACTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGACGGCACAACATTGGAAACCAGAAAGCATAGAAATTGA 1476 0.4282 MGARCSKFSLCWWPSNIKSNLHDLSDNDDGNKNEKDPWAGFTEYNMDQLKLATSGFSPDNIVSEHGEKAPNVVYRGRLEDDRLVAVKRFTKSAWPDSRQFIEEARAVGQLRNGRLANLVGFCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSRGRALYHDLNAYRILFDEEGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRINPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNAKSLVTALTPLQKDTSVLSNVLLGIPDGSLSSKETVSLTPFGEACLRRDLTAIYEILGKVGYKDDEDVANELSFQMWTNQIQETLNSKKHGDSAFHARNFSTAIDCYTEFIDGGTMVSPTVYARRCLCYLMDGMAQEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDNDAQESLKDGTTLETRKHRN 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5049g00005 491 Gene3D Transferase(Phosphotransferase) domain 1 136 328 - -
Gabi5049g00005 491 SUPERFAMILY TPR-like 388 487 IPR011990 GO:0005515
Gabi5049g00005 491 Pfam Protein tyrosine and serine/threonine kinase 72 310 IPR001245 GO:0004672|GO:0006468
Gabi5049g00005 491 ProSiteProfiles Protein kinase domain profile. 59 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5049g00005 491 FunFam probable serine/threonine-protein kinase At5g41260 136 327 - -
Gabi5049g00005 491 Gene3D Tetratricopeptide repeat domain 384 490 IPR011990 GO:0005515
Gabi5049g00005 491 FunFam probable serine/threonine-protein kinase At4g35230 384 491 - -
Gabi5049g00005 491 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Gabi5049g00005 491 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Gabi5049g00005 491 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 19 490 IPR045845 GO:0004672|GO:0009742
Gabi5049g00005 491 SUPERFAMILY Protein kinase-like (PK-like) 38 317 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5049g00005 Gabi-Chr5049 18766 22337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5049g00005 14 333 Glycoside Hydrolase AT3G07070 31.897 3.73e-40 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi5049g00005 PK_Tyr_Ser-Thr 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5049g00005 - - gmx:732542 905.59