Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5049g00004 ATGGGAGCTCGTTGCTCTAAATTTTCTCTGTGCTGGTGGCCTTCCAATATCAAATCAAACCTTCATGACTTGTCTGATAATGGTGAGGATCCTTGGGCTGGTTTCACTGAGTATAACATGGATCAACTAAAACTTGCCACTTCAGGATTTTCACCTGACAACATTGTCTCTGAGCATGGTGAGAAGGCTCCAAATGTTGTTTACAGAGGAAGGCTTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCACCAAGTCTGCTTGGCCTGATTCTCGACAATTCATAGAGGAAGCACGAGCTGTGGGGCAGCTAAGGAATGGACGGTTAGCTAACTTGGTTGGGTTTTGCTGTGAAGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTTTCCAAACATCTTTTTCACTGGGAGGCCCAGCCCATGAAATGGGCAATGAGGCTGAGGGTGGCATTGTATTTAGCACAAGCTTTGGAATACTGCAGCAGTAGAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATGAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGAGATGGCAAAAGCTATAGCACAAATTTAGCCTTCACTCCTCCAGAGTACTTAAGGACAGGAAGAATCAACCCTGAAAGTGTAATTTACAGTTTTGGCACTCTATTGCTTGATCTTCTTAGTGGAAAGCATATACCACCCAGCCATGCACTTGACCTTATACGAGGAAAAAATTTTCTATTGCTGATGGATTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGCCAAGTCACTTGTGACTGCTCTAACTCCTCTTCAGAAAGATACTTCAGTACTGTCAAATGTTTTATTGGGCATACCAGATGGGAGTCTATCATCAAAGGAAACAGTTTCATTGACACCTTTTGGTGAAGCTTGTTTAAGAAGAGATCTGACCGCAATATATGAAATTTTGGGAAAGGTGGGGTACAAGGATGATGAAGATGTTGCGAATGAGCTGTCCTTCCAAATGTGGACAAATCAAATACAAGAAACACTGAATTCTAAGAAGCATGGTGACTCTGCTTTTCATGCTAGAAACTTCTCTACGGCCATTGATTGCTATACAGAATTCATCGATGGTGGAACCATGGTATCACCAACAGTGTACGCGAGGCGCTGCTTATGCTACCTGATGGATGGCATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAGTCAGTGTCTCCCACATGGCCTACTGCATTCTATCTTCAAGCAGTTGCACTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGACGGCACAACATTGGAAACCAGAAAGCATAGAAATTGA 1458 0.4294 MGARCSKFSLCWWPSNIKSNLHDLSDNGEDPWAGFTEYNMDQLKLATSGFSPDNIVSEHGEKAPNVVYRGRLEDDRLVAVKRFTKSAWPDSRQFIEEARAVGQLRNGRLANLVGFCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSRGRALYHDLNAYRILFDEEGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRINPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNAKSLVTALTPLQKDTSVLSNVLLGIPDGSLSSKETVSLTPFGEACLRRDLTAIYEILGKVGYKDDEDVANELSFQMWTNQIQETLNSKKHGDSAFHARNFSTAIDCYTEFIDGGTMVSPTVYARRCLCYLMDGMAQEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDNDAQESLKDGTTLETRKHRN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5049g00004 485 Pfam Protein tyrosine and serine/threonine kinase 66 304 IPR001245 GO:0004672|GO:0006468
Gabi5049g00004 485 FunFam probable serine/threonine-protein kinase At4g35230 378 485 - -
Gabi5049g00004 485 FunFam probable serine/threonine-protein kinase At5g41260 130 321 - -
Gabi5049g00004 485 SUPERFAMILY TPR-like 382 481 IPR011990 GO:0005515
Gabi5049g00004 485 Gene3D Phosphorylase Kinase; domain 1 26 128 - -
Gabi5049g00004 485 ProSiteProfiles Protein kinase domain profile. 53 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5049g00004 485 FunFam probable serine/threonine-protein kinase At4g35230 25 128 - -
Gabi5049g00004 485 Gene3D Tetratricopeptide repeat domain 378 484 IPR011990 GO:0005515
Gabi5049g00004 485 SUPERFAMILY Protein kinase-like (PK-like) 36 311 IPR011009 -
Gabi5049g00004 485 Gene3D Transferase(Phosphotransferase) domain 1 130 322 - -
Gabi5049g00004 485 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 24 484 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5049g00004 Gabi-Chr5049 18766 22337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5049g00004 14 327 Glycoside Hydrolase AT3G07070 31.503 8.94e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi5049g00004 PK_Tyr_Ser-Thr 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5049g00004 - - gmx:732542 893.649