Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5049g00003 ATGGGAGCTCGTTGCTCTAAATTTTCTCTGTGCTGGTGGCCTTCCAATATCAAATCAAACCTTCATGACTTGTCTGATAATGGTGAGAAGGATCCTTGGGCTGGTTTCACTGAGTATAACATGGATCAACTAAAACTTGCCACTTCAGGATTTTCACCTGACAACATTGTCTCTGAGCATGGTGAGAAGGCTCCAAATGTTGTTTACAGAGGAAGGCTTGAAGATGATAGGTTGGTTGCTGTGAAGCGCTTCACCAAGTCTGCTTGGCCTGATTCTCGACAATTCATAGAGGAAGCACGAGCTGTGGGGCAGCTAAGGAATGGACGGTTAGCTAACTTGGTTGGGTTTTGCTGTGAAGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTTTCCAAACATCTTTTTCACTGGGAGGCCCAGCCCATGAAATGGGCAATGAGGCTGAGGGTGGCATTGTATTTAGCACAAGCTTTGGAATACTGCAGCAGTAGAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATGAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGAGATGGCAAAAGCTATAGCACAAATTTAGCCTTCACTCCTCCAGAGTACTTAAGGACAGGAAGAATCAACCCTGAAAGTGTAATTTACAGTTTTGGCACTCTATTGCTTGATCTTCTTAGTGGAAAGCATATACCACCCAGCCATGCACTTGACCTTATACGAGGAAAAAATTTTCTATTGCTGATGGATTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCACGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGCCAAGTCACTTGTGACTGCTCTAACTCCTCTTCAGAAAGATACTTCAGTACTGTCAAATGTTTTATTGGGCATACCAGATGGGAGTCTATCATCAAAGGAAACAGTTTCATTGACACCTTTTGGTGAAGCTTGTTTAAGAAGAGATCTGACCGCAATATATGAAATTTTGGGAAAGGTGGGGTACAAGGATGATGAAGATGTTGCGAATGAGCTGTCCTTCCAAATGTGGACAAATCAAATACAAGAAACACTGAATTCTAAGAAGCATGGTGACTCTGCTTTTCATGCTAGAAACTTCTCTACGGCCATTGATTGCTATACAGAATTCATCGATGGTGGAACCATGGTATCACCAACAGTGTACGCGAGGCGCTGCTTATGCTACCTGATGGATGGCATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAGTCAGTGTCTCCCACATGGCCTACTGCATTCTATCTTCAAGCAGTTGCACTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGACGGCACAACATTGGAAACCAGAAAGCATAGAAATTGA 1461 0.4292 MGARCSKFSLCWWPSNIKSNLHDLSDNGEKDPWAGFTEYNMDQLKLATSGFSPDNIVSEHGEKAPNVVYRGRLEDDRLVAVKRFTKSAWPDSRQFIEEARAVGQLRNGRLANLVGFCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSRGRALYHDLNAYRILFDEEGNPRLSCFGLMKNSRDGKSYSTNLAFTPPEYLRTGRINPESVIYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNAKSLVTALTPLQKDTSVLSNVLLGIPDGSLSSKETVSLTPFGEACLRRDLTAIYEILGKVGYKDDEDVANELSFQMWTNQIQETLNSKKHGDSAFHARNFSTAIDCYTEFIDGGTMVSPTVYARRCLCYLMDGMAQEALGDAMQAQSVSPTWPTAFYLQAVALFSLGMDNDAQESLKDGTTLETRKHRN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5049g00003 486 SUPERFAMILY Protein kinase-like (PK-like) 36 312 IPR011009 -
Gabi5049g00003 486 FunFam probable serine/threonine-protein kinase At4g35230 379 486 - -
Gabi5049g00003 486 SUPERFAMILY TPR-like 383 482 IPR011990 GO:0005515
Gabi5049g00003 486 Pfam Protein tyrosine and serine/threonine kinase 67 305 IPR001245 GO:0004672|GO:0006468
Gabi5049g00003 486 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 26 485 IPR045845 GO:0004672|GO:0009742
Gabi5049g00003 486 Gene3D Phosphorylase Kinase; domain 1 26 129 - -
Gabi5049g00003 486 ProSiteProfiles Protein kinase domain profile. 54 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5049g00003 486 FunFam probable serine/threonine-protein kinase At5g41260 131 322 - -
Gabi5049g00003 486 Gene3D Tetratricopeptide repeat domain 379 485 IPR011990 GO:0005515
Gabi5049g00003 486 Gene3D Transferase(Phosphotransferase) domain 1 131 323 - -
Gabi5049g00003 486 FunFam probable serine/threonine-protein kinase At4g35230 26 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5049g00003 Gabi-Chr5049 18766 22337 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5049g00003 39 328 Glycoside Hydrolase AT3G07070 32.704 9.09e-39 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Gabi5049g00003 PK_Tyr_Ser-Thr 1.4e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5049g00003 - - gmx:732542 895.19