Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5040g00010 ATGTGTGGCGGTGCTATCATCGCTGACTTCATCCCTCGCCGTGGAGGTCGCCGCCTCACGGCCTCCGAGCTCTGGCCTAACTCATTCGGTGGTAAGCAGAATGACTCGGACTTCGATTATTCTCAGATGGGTCATCAACAATCACCCACCCCCAAAAGATCCCAACCTTCTACTGTTAGCGAGCAAGTTGAGAAGCCGGTGAAAAGGCAGAGGAAAAACCTCTACAGAGGGATTCGACAGCGTCCGTGGGGCAAATGGGCGGCGGAGATTCGCGATCCCAGGAAAGGGGTTCGTGTTTGGTTGGGTACCTTCAATACTGCGGAAGAAGCTGCAAGGGCCTATGATCGAGAGGCTCGAAAAATCCGCGGCAAGAAAGCCAAGGTGAATTTTCCAAACGAAGACGACGAGTATTCAATTCAGGTTCGTCATAGTAATCATAATCCACCCCCTCCACTACGATTGCAAAACCCTCCCCTGTTTCAACAACAATACTGTTGCGATCTGAATAATGCCTCTAAAAATCTAAACTTGGAGTTTGGTTATGATCTGAACCAAGCTGGGGCAATTCCTCCCCCTCCCCTTTTGGGTGGTATCAGCACTGATCCAGTTATTGTTTCTGGTGATGAAATTTCTGGGTCAGGGTCAGAGGGTGCTTACTCGACAACTGAGTTCATGGGCTCCAATCAGAATGCGAGCGGTTATTTTAGTGGTGGGGTGAAGATGAATGAGAAAGAAGAACAGGTGATTGAAGCCCAAGCGGAAAAGAATGAAGTGCAGGAGCTATCTGATGAGCTAATGGCATACGAGAACTATATGAAGTTTTATCAGATTCCGTACTATGATGGGCAATCGATGGCGTCGAATAATGTTCAGGAAAGCGTGGTTGGTGAACTCTGGAGCTTCGATGAATGA 912 0.4857 MCGGAIIADFIPRRGGRRLTASELWPNSFGGKQNDSDFDYSQMGHQQSPTPKRSQPSTVSEQVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQVRHSNHNPPPPLRLQNPPLFQQQYCCDLNNASKNLNLEFGYDLNQAGAIPPPPLLGGISTDPVIVSGDEISGSGSEGAYSTTEFMGSNQNASGYFSGGVKMNEKEEQVIEAQAEKNEVQELSDELMAYENYMKFYQIPYYDGQSMASNNVQESVVGELWSFDE 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5040g00010 303 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Gabi5040g00010 303 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Gabi5040g00010 303 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Gabi5040g00010 303 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Gabi5040g00010 303 PANTHER DNA-BINDING DOMAIN 48 250 IPR044808 GO:0003700|GO:0009873
Gabi5040g00010 303 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Gabi5040g00010 303 Coils Coil 241 271 - -
Gabi5040g00010 303 MobiDBLite consensus disorder prediction 23 73 - -
Gabi5040g00010 303 MobiDBLite consensus disorder prediction 26 63 - -
Gabi5040g00010 303 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Gabi5040g00010 303 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Gabi5040g00010 303 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Gabi5040g00010 303 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5040g00010 Gabi-Chr5040 97655 99076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5040g00010 1 132 AP2-EREBP Transcription Factor Family AT3G16770 56.618 7.67e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi5040g00010 AP2 9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5040g00010 K09286 - gmx:100780763 431.024