Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5040g00004 ATGTTTTCAAAATACGATTTTATAAAATCTCTAAATTCCTCTAAGGATGATTGGAGGATTAAGGTTAGGGCCATTAGGACTTGGAAGGTCCCTAATTATGAGAAAAAGGGATTTGATGACAATCTGGAGATGATTCTGGCAGATGAACATGGTTCTACGATCCATGCTACTGTCAGAGGGACTTTGCAAGTTAGAAAAAAAATTATAGAAGGGGAAGCATACATTATTAGAAATTTTGGAGTTGGATTGAATGGTGAAGGTTTCAAGGCAACTAGGCATGTTTACAAAATTTCTTTCAACTTGAGGACAGATGTTAAGGCCATTGTTGATGCTACCATACCTGTCAATTATGTCATCGGTTTACTGACTGGAACTAGCGAAGTTGAAGAGCATGATGTGTTTGGTAGGAAAGCAAAAAAAATTGTGCTGGAGCTTGATAACCACAGAGGTCAGAAACTTGAATGCACATTGTGGGAGCATTACGTTGATGAAGTGCAGAGTTTTTTGGCAAATAATCAGGCTTCTCAGAATGTTATAATAGTTCATCTTGCAAAGATGAAGGATTTCAGAGGTCAAAAGTCAATAACTAATACAAGATATACAATGCGTCTCATTATGGATTCGAATGTAACAGAAATTATTGAATTCAAGAAACAGCTTGTAAATGTTTCAGCGGATTGTATTCGTGGATTGTCCCAGTTGTCTACTCAATCGACATATTCCTTTGAGAATGATTTTCTTAAAAATACAGAAAGAAAGTGTATTACTGATATTAAAATTTCTACCGAGGTTATGACGTGTATTGCTTACGGAACTATCAAAGAAATTGAGAGTAAATACAACTGGTGGTACAAATCCTGTAAGAAATGCCCGTATTCTGTTTTTGAAGATTATGAGAAATGTGTTCAAGTCAGAGTTGTTGATAACACCGATTCTGCATCGTTCATTCTCTTTGATAGAGATTGTGTTACTTTGTTAGGTATGAGTGCTTCTGATTTGCGTGAATTGCAATACAAGAGGGGTGCTGATTTGGAACATTATCCAAAAGAATTTGATGTTCTTATTGACAAGTCCATGCTGTTCAAGATTAATGTTAGAAAAAACAATTTTGACTCATACAGTGAGCCTAAATATCAAGTTTCTAAAGTTTGCACCGACGAAACTATTATGTCTTCCTTCATCAAGTCTGCAACAGAATTAAATGATGAAACTCTGTTTGATCAAGCTTTCGACAATGACATTGTTGCTGCTGAAAATGGAAGAGCTGCGGATGTTGCGAGTCAGACATGTGAAAGTGCAGATCCTGTTAATGATTCTCTGTCTACGATGACACCGTCTGTCAATTCTAATGAATTTATAGACGAAATTGGTGAACGTTCTGTTGTCCATACAATTAAAAAAATTAAATTGGAGAAATTTTTTGATGCAGCGAATGAAGACAACGTGGCAGATTAA 1455 0.3581 MFSKYDFIKSLNSSKDDWRIKVRAIRTWKVPNYEKKGFDDNLEMILADEHGSTIHATVRGTLQVRKKIIEGEAYIIRNFGVGLNGEGFKATRHVYKISFNLRTDVKAIVDATIPVNYVIGLLTGTSEVEEHDVFGRKAKKIVLELDNHRGQKLECTLWEHYVDEVQSFLANNQASQNVIIVHLAKMKDFRGQKSITNTRYTMRLIMDSNVTEIIEFKKQLVNVSADCIRGLSQLSTQSTYSFENDFLKNTERKCITDIKISTEVMTCIAYGTIKEIESKYNWWYKSCKKCPYSVFEDYEKCVQVRVVDNTDSASFILFDRDCVTLLGMSASDLRELQYKRGADLEHYPKEFDVLIDKSMLFKINVRKNNFDSYSEPKYQVSKVCTDETIMSSFIKSATELNDETLFDQAFDNDIVAAENGRAADVASQTCESADPVNDSLSTMTPSVNSNEFIDEIGERSVVHTIKKIKLEKFFDAANEDNVAD 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5040g00004 484 SUPERFAMILY Nucleic acid-binding proteins 250 384 IPR012340 -
Gabi5040g00004 484 Gene3D - 108 223 IPR012340 -
Gabi5040g00004 484 PANTHER OS03G0429900 PROTEIN 7 404 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi5040g00004 484 Pfam Domain of unknown function DUF223 43 107 IPR003871 -
Gabi5040g00004 484 CDD RPA1_DBD_C 267 383 IPR047192 -
Gabi5040g00004 484 Gene3D - 7 107 IPR012340 -
Gabi5040g00004 484 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Gabi5040g00004 484 Gene3D - 237 395 IPR012340 -
Gabi5040g00004 484 SUPERFAMILY Nucleic acid-binding proteins 118 218 IPR012340 -
Gabi5040g00004 484 CDD RPA1_DBD_A_like 19 105 - -
Gabi5040g00004 484 CDD RPA1_DBD_B_like 118 220 - -
Gabi5040g00004 484 Pfam Replication factor-A C terminal domain 276 383 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5040g00004 Gabi-Chr5040 40179 42814 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5040g00004 8 383 Core DNA Replication Machinery Family AT4G19130 22.551 6.07e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5040g00004 - - adu:107490971 251.136