Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5040g00002 ATGAATAGCCTCAGAAGAAGAGCACCCTTTCTGGCTCTTATATTCATTCTGACCCTGCTTTCTGCACTACTCTTTTTGGGAACCCATATCACAGCAACAAGAGCACCAGAAAAACACCTCCATTTCCAAAAGCATATACAAATAGCCCACTCTACATGCCAAGGAACACTCTACCCAGACCTATGTGTCTCAACCCTTGCCACATTCCCAGATCTTACCTCAAAATCTGTCCCACAAATTATCTCCTCCGTGGTCAACCACACCGTGTACGAGGTAAAATCATCATCCAACAACTGTAGCGGCCTAAGAAAGAAGCTCAAAAATCTGAACCCACTTGAACAGAGAGCCCTCGACGACTGTCTGAAACTGTTAGATGACACCACTTTGGAGCTCAAAACCACCATTTCTGATCTCTCCAAAAGCACAATAGGTTCCAATCAACACCATGACTTGCAGACTCTGCTAAGCGGCGCAATGACCAACTTGTACACGTGCCTCGATGGTTTTGCTTACAGCAAAAAAAAGGTGAGAGACAGAATCCAGGACAAGTTGCTTCAGATATCACAGCATGTTAGTAACTCCTTGGCCATGCTAAAGAAAGTGCCTGGAATAAACAAAACATCCAAAACTGAAGCTTTTCCCGAATATGGAAAGATGAAAAGTGGTTTCCCCTCGTGGGTTTCCTCCAAAGACCGAAATATCCTCCAAGCTACTGTAAATGAAACCAAGTTTGATCTTGTTGTTTCCAAAGATGGCACTGGCAATTTCACCACCATAGGGGAAGCACTAAATGTGGCTCCGAACTCCAGCACAACCAGGTTTGTGATACACATAAAGGCTGGGGCATACTTTGAGAATGTGGAAGTGATTAGGAAGAAGAGCAATTTAATGTTTGTTGGAGATGGGATTGGAAAAACGGTAATGAAAGGCAGTAGGAATGTTGTGGATGGGTGGACCACTTTCCAATCAGCTACTTTCGCTGTGGTAGGAGAAGGATTCATAGCGAAGGGTATAACCTTTGAGAACTCAGCAGGACCAGACAAACACCAAGCCGTGGCACTGAGAAGTGGTGCTGATTTCTCAGCCTTCTACCAATGCAGCTTTGTTGGGTACCAGGACACTCTCTATGTCCATTCCTTGCGCCAATTCTATCGTGAATGCGACATTTATGGCACTGTAGACTTCATTTTTGGCAATGCAGCAGTGGTTTTCCAAAACTGTAACTTGTACGCACGCAAGCCAAATGAAAATCAGAAGAATTTGTTCACTGCACAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCCATCTTGAACTGCAAGATTGCAGCTGCTGCAGATTTAATCCCTGTTAAATCTTCATTCAAGAACTACCTGGGTCGTCCTTGGAAATTGTATTCAAGGACAGTTTATCTGAAATCTTACATGGAGGATCTGATAGACCCAGCAGGGTGGTTGGAATGGAATGACACGTTTGCTTTGGATACACTGTATTATGGAGAGTACATGAATAGGGGTCCAGGTTCAAACACAAGTGGTAGAGTTAAGTGGCCAGGTTATAGGGTCATCAACAGTTCCACCGAGGCAAGCCAGTTCACGGTAGGGCAGTTTATACAAGGCAATGACTGGTTGAACTCCACCGGCATTCCTTTCTTCTCTAATTTGAGTTAA 1674 0.4432 MNSLRRRAPFLALIFILTLLSALLFLGTHITATRAPEKHLHFQKHIQIAHSTCQGTLYPDLCVSTLATFPDLTSKSVPQIISSVVNHTVYEVKSSSNNCSGLRKKLKNLNPLEQRALDDCLKLLDDTTLELKTTISDLSKSTIGSNQHHDLQTLLSGAMTNLYTCLDGFAYSKKKVRDRIQDKLLQISQHVSNSLAMLKKVPGINKTSKTEAFPEYGKMKSGFPSWVSSKDRNILQATVNETKFDLVVSKDGTGNFTTIGEALNVAPNSSTTRFVIHIKAGAYFENVEVIRKKSNLMFVGDGIGKTVMKGSRNVVDGWTTFQSATFAVVGEGFIAKGITFENSAGPDKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKNYLGRPWKLYSRTVYLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYMNRGPGSNTSGRVKWPGYRVINSSTEASQFTVGQFIQGNDWLNSTGIPFFSNLS 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5040g00002 557 FunFam Pectinesterase 45 202 - -
Gabi5040g00002 557 SUPERFAMILY Pectin lyase-like 243 554 IPR011050 -
Gabi5040g00002 557 CDD PMEI-like_3 51 203 - -
Gabi5040g00002 557 SMART PMEI_2 44 197 IPR006501 GO:0004857
Gabi5040g00002 557 ProSitePatterns Pectinesterase signature 2. 389 398 IPR033131 -
Gabi5040g00002 557 PANTHER PECTINESTERASE 24 546 - -
Gabi5040g00002 557 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 50 202 IPR035513 -
Gabi5040g00002 557 Pfam Plant invertase/pectin methylesterase inhibitor 50 197 IPR006501 GO:0004857
Gabi5040g00002 557 NCBIfam pectinesterase inhibitor domain 22 200 IPR006501 GO:0004857
Gabi5040g00002 557 Pfam Pectinesterase 245 542 IPR000070 GO:0030599|GO:0042545
Gabi5040g00002 557 Gene3D - 239 556 IPR012334 -
Gabi5040g00002 557 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 203 IPR035513 -
Gabi5040g00002 557 FunFam Pectinesterase 239 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5040g00002 Gabi-Chr5040 30040 33991 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5040g00002 73 556 Carbohydrate Esterase AT4G02320 57.143 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5040g00002 K01051 - gmx:100802881 935.25