Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5040g00001 ATGGCTTTAAAGCACTTCTCAATTCTTACGTTCTCTCTTTCCTATCTTCTTTCTTTCTTGGTTTTGGCATCATTATCCATAGCTGATGACCCTTCATCCTCCATTGTTCCACCAGCAACCATTTGCGGGTCCACTGTTGATCCTACTTATTGCAAAACCGTGCTTGCTAACCAAAATGGCAACATCTTCGACTATGGCCGCATTTCTGTTAGAAAGTCATTGTCCCAGTCCCGTAAGTTCTTGAACTTAGTGGACTCATATCTTCAAGGTAGCTTGTCTTTGTCTCAATCCACAATTGGCGCTCTTGAAGATTGCAAATTCCTTGCTGAACTAAATTTAGAATACTTAACAAACACCTATGCCACGGCTAATCAAGCTAGTGGTCTTCTTCCCACTTCTCAAGCTGAAGATTTTGAAACCTATCTCAGTGCCGTTTTGACTAATCAACAGACATGTTTAGATGGCCTACAGACTACAACCTCTGATCCAACCGTGAAGAACGACGTGTCGTCTACGCTCTCCGATGACACCAAGCTTCACAGTGTCACTTTGGCTCTGTTCCTAAAGGGTTGGGTGCCTAAGAAGAAAATCATGACTTCATGGCCACAAAATGGGAGACATTTGGATTTCCATAATGGCCGTTTACCGTTGCAGATGTCAAACCGAGTACGTGCTATTTATGATTCCGCTAGAAATAGACGTCATGGGAGAAAACTGCTTCAAGCAGGCAGTGTTGTGGTAAGTGACATTGTGGTTGTTAGTCAGGATGGAACCGGAAACTTCACCACTATCAATGCCGCTATAGCTGCTGCACCAAACAACACAGCTGCTAGTAATGGATACTTCTTGATTTTTATAACTCAAGGTGTGTATCAAGAGTATGTATCCATTGACAAAACCAAGAAGTACTTGATGCTAGTTGGAGATGGAATTAATCAGACAATTATCACTGGCAATCACAGTGTTGGCGACAATTCTACAACATTCAACTCAGCAACATTTGCTGTGGTTGCTCAAGGGTTCGTAGCAGTTAACATAACATTCAGGAACACAGCTGGACCAAGCAAGTTCCAAGCAGTTGCGGTAAGAAGTGGAGCTGATATGTCCACCTTCTATAGCTGCAGCTTTGAAGGGTATCAAGACACATTATATACGCATTCTCTGAGGCAGTTTTACAGAGAATGTGATATATATGGCACAGTTGACTACATATTTGGAAATGCTGCTGTTGTTTTCCAAAACTGCAACATCTATTCTCGCCTTCCCCTCAGTGGACAATTTAACACCATCACAGCTCAAGGTCGAACTGATCCAAATCAAAACACAGGCACTTCCATACAAAACGCTACCATTAAAGCAGCGGATGATTTGGCTCCGAATATTGGTACCGTGAGAACCTACCTTGGGAGACCATGGAAGGAGTATTCAAGGACAGTTTTTATGCAATCCTTCATGGATCGTTTGATAAACCCTGCTGGTTGGAGTGAATGGAGTGGTGATTTTGCGTTGAGTACCTTGTACTATGCAGAATATAATAACGCTGGACCTGGTTCAAACACTACGAACCGAGTGACATGGCCTGGTTATCATATTATCAATGCTACTGATGCTGCCAATTTCACGGTTTCTAACTTCTTGAGTGGGGATAATTGGCTTCCTCAAACTGGTGTCCCATACTTGAGTGGATTATAG 1692 0.4267 MALKHFSILTFSLSYLLSFLVLASLSIADDPSSSIVPPATICGSTVDPTYCKTVLANQNGNIFDYGRISVRKSLSQSRKFLNLVDSYLQGSLSLSQSTIGALEDCKFLAELNLEYLTNTYATANQASGLLPTSQAEDFETYLSAVLTNQQTCLDGLQTTTSDPTVKNDVSSTLSDDTKLHSVTLALFLKGWVPKKKIMTSWPQNGRHLDFHNGRLPLQMSNRVRAIYDSARNRRHGRKLLQAGSVVVSDIVVVSQDGTGNFTTINAAIAAAPNNTAASNGYFLIFITQGVYQEYVSIDKTKKYLMLVGDGINQTIITGNHSVGDNSTTFNSATFAVVAQGFVAVNITFRNTAGPSKFQAVAVRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDYIFGNAAVVFQNCNIYSRLPLSGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPNIGTVRTYLGRPWKEYSRTVFMQSFMDRLINPAGWSEWSGDFALSTLYYAEYNNAGPGSNTTNRVTWPGYHIINATDAANFTVSNFLSGDNWLPQTGVPYLSGL 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5040g00001 563 FunFam Pectinesterase 39 189 - -
Gabi5040g00001 563 PANTHER PECTINESTERASE 24 553 - -
Gabi5040g00001 563 SUPERFAMILY Pectin lyase-like 246 562 IPR011050 -
Gabi5040g00001 563 CDD PMEI-like_3 40 191 - -
Gabi5040g00001 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Gabi5040g00001 563 SMART PMEI_2 33 186 IPR006501 GO:0004857
Gabi5040g00001 563 Pfam Plant invertase/pectin methylesterase inhibitor 40 186 IPR006501 GO:0004857
Gabi5040g00001 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 187 IPR035513 -
Gabi5040g00001 563 Pfam Pectinesterase 251 549 IPR000070 GO:0030599|GO:0042545
Gabi5040g00001 563 Gene3D - 245 563 IPR012334 -
Gabi5040g00001 563 FunFam Pectinesterase 244 563 - -
Gabi5040g00001 563 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5040g00001 Gabi-Chr5040 8915 11438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5040g00001 17 563 Carbohydrate Esterase AT1G02810 60.245 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5040g00001 K01051 - gmx:100786124 838.18