Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi503g00001 ATGAACATGTTAGGCCTTAGAGACCTAGTTTTCATAGCTCCAACCTCTCCTATGCACCAACAGGGCCAACCCATTTCAGCAGAACCTCATGCCAACCTTCCTTTGTCTTCATCAGCTTCTCTAAGTGTCGGTCTTGGCATTTTCCCACTCCTAACTGCCACTCCCTGCATGTCACATCCTCATGGAAATGATGTTCAAGATTGTGACAACGCTTGCAACCCCAACTATTGGAACCTCAAGATGTGCCCAGAAGTGAATTCTGCAAGAAAAGGAGTGATGATCAACGTGGAAGAAGATGAGAACAACAAGCACATGATGGAGAGTGAGGAAAATGGTATCTATGGGGTTGAGTTCAGGGTGTGTCAGGATTGTGGTAACAGGGCAAAGAAAGATTGCACCTTTAAAAGATGCAGAACCTGTTGCAAGGGACGTGGCTATAATTGCAGCACTCACGTGAAGAGCACGTGGATCCCAGCATCACTGCGGCGGGACCGGAATACGGCGGTGGCTGGTGGTGGTGGTGATGACGACGGTTGTTCTAAGAGGCCAAGAGTTTTGGGGTCATCACATAATGGTGTTGCTGTTGCTGCTACCTCTCCAAGTTCAATCTCCAATGCTACCACAACAAAGAGCTTAACCTTAGATACTAGCTCTTGTCACCAAGATGTTGGTTTCAAACAATCTTTACCTCGTCATGTTTGTGCACCTGCTGTGTTTAGGTGCCATAGAGTGTCTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTGGCCACGGTTAACATTAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCATGGTGTTGATGAGAAAAATGAAATGCCTTGTGTTTCAGAACTGCAACTGGGAAACAATGGCAGTGGAATGAATAATAGGGAATGTTCTTCTGCAATTGGGGTTCCAACCAGTGCCTACCCTGCTTCTGCTTGCTGA 957 0.4639 MNMLGLRDLVFIAPTSPMHQQGQPISAEPHANLPLSSSASLSVGLGIFPLLTATPCMSHPHGNDVQDCDNACNPNYWNLKMCPEVNSARKGVMINVEEDENNKHMMESEENGIYGVEFRVCQDCGNRAKKDCTFKRCRTCCKGRGYNCSTHVKSTWIPASLRRDRNTAVAGGGGDDDGCSKRPRVLGSSHNGVAVAATSPSSISNATTTKSLTLDTSSCHQDVGFKQSLPRHVCAPAVFRCHRVSAIGNGEDEFAYLATVNISGHVFKGFLYDHGVDEKNEMPCVSELQLGNNGSGMNNRECSSAIGVPTSAYPASAC 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi503g00001 318 NCBIfam putative zinc finger domain, LRP1 type 120 161 IPR006510 -
Gabi503g00001 318 Pfam Domain of unknown function (DUF702) 120 277 - -
Gabi503g00001 318 NCBIfam LRP1 C-terminal domain 229 276 IPR006511 -
Gabi503g00001 318 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 89 301 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi503g00001 Gabi-Chr503 6079 14049 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi503g00001 1 306 C2H2 Transcription Factor Family AT5G12330 37.231 5.09e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Gabi503g00001 DUF702 4.8e-52 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi503g00001 - - gmx:100777812 431.795