Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5039g00001 ATGAACTACAATTTGTCAGAAGAGCCTCTTAAGACAGACCATAGTGATCATAGTTGTGCAAATTCAGGAAATAGTTCACCAACACATCCCACAAAGGGGAATCAAGCAGCAAAAGATGCATGCACAACTGATTATTCAACAAGTGGAGCTGGAAATATGGACCATGTTTCTAAAACTGATGCAAAGTTGGCAAGTAAATCAAAACCTGAGAAATTAAAACCAACAAGCAGAAACATTTCTGATCATGCACCTAACTCACCAAGACCACCAATAGGAATGTCAAAGGGAATGATGTCTACCCATACAAAGACCACAAATCAAGGTCCAGGGAGTGGAACTAGCTCTAGAAGTGACAGTTTAGAGAGCACAAGTGCAACCATTAGGCCACATACTGGTGGTGATGTAAGGTGGGAAGCAATTCACATGGTTTCCAAGGGTGGCCCTCTCAATCTTAGCCATTTTAGGCTTCTCAAGCGCATTGGTTATGGAGACATTGGAAGTGTATATCTTGTGGAACTTAAAGGAACCAAGGCTCACTTTGCCATGAAAGTAATGGACAAGGCAGCTCTTATAAGCAGAAATAAGCTTCTGAGAGCACAAACAGAAAGGGAGATTCTTGGACTTCTTGATCACCCCTTCTTGCCAACTTTGTATTCTTACTTTGAAACTGACAAGTTTTACTGTTTGGTCATGGAGTTCTGTAGTGGAGGTGATCTTCATTCTCTTAGACAGAAGCAACCTCACAAGTGTTTCACCGAAGAGGCAGCAAGGTTTTATGCTACAGAGGTTTTGTTAGCTCTTGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTATTAGTAAGAGATGAAGGGCATATCATGCTATCTGATTTTGATTTATCACTTCGCTGTTCTGTGTGTCCTACACTTGTGAAGTCTTCATCTGCAAATGTAGGCAATGGTGGTAGTAGTGATTCTGGAGGCATGTTAGGTGATGAGCAAGGAGTGCAAGCAAGTACTCAATCATCATCAGGTTTTTTCCCACGCATTTTACCTTCAAAGAAGAACCGCAAGTCAAAATCAGATTTTGGCCTATTGGTTGGTGGAACTAGACTTCCTGAACTGATGGCAGAACCCACCAATGTACGTTCAATGTCATTTGTAGGGACACATGAATATCTTGCTCCTGAGATTATCAGAGGAGAGGGTCATGGTAGTGCAGTAGATTGGTGGACTTTTGGTATCTTCTTGTATGAGTTGTTGCATGGAACAACACCTTTTAAGGGTGCAGGATATAAAGCCACACTTTTTAATGTTGTTGGTCAACCATTGAGGTTCCCAGAAACTCCTCAGGTTAGTGCTGTGGCTCGTGATCTTATTAAAGGACTGTTGGTGAAAGAACCTCAGAAGAGAATTGCATATAAAAGAGGAGCAACAGAAATAAAACAACACCCTTTTTTTGAGGGAGTGAATTGGGCTCTAGTTAGAAGTGCCACACCTCCTCATATACCAGACCTTATTGATTTTTCCAAATATGCTAGCAAAAACACAGCACCCCCACCTGACAAGAAGATGGCAGATATTGCTAATGATAAAAACAGTAACAGTAACAGTAACAATAATACTGATTCCTACATAGAATTTGAGTATTTTTAG 1656 0.4094 MNYNLSEEPLKTDHSDHSCANSGNSSPTHPTKGNQAAKDACTTDYSTSGAGNMDHVSKTDAKLASKSKPEKLKPTSRNISDHAPNSPRPPIGMSKGMMSTHTKTTNQGPGSGTSSRSDSLESTSATIRPHTGGDVRWEAIHMVSKGGPLNLSHFRLLKRIGYGDIGSVYLVELKGTKAHFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHSLRQKQPHKCFTEEAARFYATEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVCPTLVKSSSANVGNGGSSDSGGMLGDEQGVQASTQSSSGFFPRILPSKKNRKSKSDFGLLVGGTRLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQVSAVARDLIKGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSATPPHIPDLIDFSKYASKNTAPPPDKKMADIANDKNSNSNSNNNTDSYIEFEYF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5039g00001 551 MobiDBLite consensus disorder prediction 97 129 - -
Gabi5039g00001 551 MobiDBLite consensus disorder prediction 517 543 - -
Gabi5039g00001 551 MobiDBLite consensus disorder prediction 16 54 - -
Gabi5039g00001 551 FunFam Serine/threonine-protein kinase AGC1-5 152 237 - -
Gabi5039g00001 551 CDD STKc_phototropin_like 152 508 - -
Gabi5039g00001 551 FunFam Serine/threonine-protein kinase AGC1-7 380 505 - -
Gabi5039g00001 551 Pfam Protein kinase domain 374 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5039g00001 551 Pfam Protein kinase domain 155 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5039g00001 551 SUPERFAMILY Protein kinase-like (PK-like) 141 517 IPR011009 -
Gabi5039g00001 551 Gene3D Transferase(Phosphotransferase) domain 1 240 504 - -
Gabi5039g00001 551 PANTHER FLIPPASE KINASE 1-RELATED 32 513 - -
Gabi5039g00001 551 ProSiteProfiles AGC-kinase C-terminal domain profile. 488 551 IPR000961 GO:0004674|GO:0005524|GO:0006468
Gabi5039g00001 551 FunFam serine/threonine-protein kinase D6PK-like 238 305 - -
Gabi5039g00001 551 MobiDBLite consensus disorder prediction 333 349 - -
Gabi5039g00001 551 MobiDBLite consensus disorder prediction 59 77 - -
Gabi5039g00001 551 Gene3D Phosphorylase Kinase; domain 1 148 239 - -
Gabi5039g00001 551 MobiDBLite consensus disorder prediction 317 359 - -
Gabi5039g00001 551 MobiDBLite consensus disorder prediction 1 130 - -
Gabi5039g00001 551 ProSiteProfiles Protein kinase domain profile. 154 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5039g00001 551 SMART serkin_6 154 487 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5039g00001 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5039g00001 Gabi-Chr5039 29393 31820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5039g00001 72 551 AGC Kinase Gene Family AT1G79250 66.075 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gabi5039g00001 Pkinase 2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5039g00001 - - gmx:100784301 829.706