Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5038g00005 ATGGCTCCCAATTGGTTTGTTCTTCTTTTCTTTCTTTCACGTGCTGCTCTTTGTTCCTCTTCCGAGCCTCGCAACCACGAAGTGGAGGCTTTGATGAGTATAAGGGCAACACTGAATGATCCACATGGCGTGCTGAGCAACTGGGATGAATTCTCTGTGGACCCTTGCAGCTGGACAATGATTACTTGCTCCTCTGATTACCTTGTTATTGGACTGGGAGCACCCAGTCAATCTCTTTCTGGAACTCTGTCTCCAGCAATTGGGAATCTCAAAAATCTTCGACAAGTGTTACTACAGAACAACAACATCTCTGGCAAAATGCCAACGGAGCTTGGTGAACTTCCCAAACTTCAGACTTTAGATCTTTCCAATAATAGATTCTGTGGGGTGATACCAGGGTCTCTCAGTCAGTTAAATAGTCTTCAGTACCTGAGGCTGAACAACAATAGCTTGTCTGGGCCTTTTCCTGTGTCACTAGCGAAAATCCCACAACTTGCTTTCTTGGACTTGTCTTATAACAATCTCAGTGGACCATTGCCCAAGTTTCCAGCTAGATCATTCAATGTTGTCGGAAATCCATTGATTTGTGGAAGCAGCTCTACTGAAGGATGCTCCGGTTCAGCAACCCTCATGCCTGTTTCCTTCTCTCTAGCATCATCACAAGGGAAAAACAAGTCCAAGAAACTAGCACTTGCACTTGGGATCAGCCTTAGTTGTGTTTGTTTCGTATTCCTGTTTTTATGGCTCTTTTGGTATCATAAGAAAAGGCAGCACCGACCAATACTGTACATCGAATATCATCAAGAAGAAGGAATTGTTAGCTTGGGAAATCTGAAAAAATTCACTTTCAGAGAGCTCCAAAGTGCAACAGATAATTTCAGCCACAGGAACTTACTTGGTGCTGGAGGCTTTGGCAATGTTTATAGGGGGAAACTTGGAGACGGAACAATGGTGGCAGTGAAAAGGCTGAAGGATGTGACTGGGAGTGCTGGTGAATCACAGTTCCGAACAGAAGTGGAGATGATAAGCTTGGCAGTTCACCGCAATTTACTTCGCTTAATTGGATATTGTGCCACTCCTAATGAAAAGCTTCTGATTTATCCTTTTATGTCTAATGGCAGTGTGGCCTCCAAGCTTAGAGGCAAACCTGCTTTAGATTGGAACACAAGAAAGAGAATAGCGATTGGAGCTGCCAGAGGTCTTCTCTATCTACATGAGCAATGTGATCCTAAGATAATACACAGAGATGTTAAGGCTGCTAATGTGCTTCTGGATGACTATTGTGAAGCTGTTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGACCATGCTGACTCCCATGTCACCACTGCTGTCCGCGGCACTGTAGGGCACATTGCACCAGAGTACCTCTCCACTGGCCAATCTTCTGATAAAACTGATGTATTTGGATTTGGCATTCTCTTGTTGGAGCTCATAACTGGAATGACAGCTCTTGAGTTTGGAAAAACGCTGAATCAAAAAGGAGCAATGCTAGAATGGGTTAGGAAAATACAGCATGAAAAGAAAGTTGAAGTGTTGGTGGACAAGGAACTTGGAAGCAACTATGACAGGATAGAAGTGGGGGAGATGCTGCAAGTAGCTTTACTTTGTACTCAAAATTTGCCAGCACACCGCCCCAAAATGTCTGAAGTCGTTCGAATGCTTGAAGGTGATGGCCTTGCTGAGAAATGGGCAGCATCACATAATCATGCTAGTCTCAGTCTGAACACCCTTCACTGCAACTGTAGCAAAAGTTTATCCCACCCTACCACTGCTTCAAAGCATGATGATAATAATGTTCATGATCGTTCCAGCATGTTTGGCATGACAATGGATGATGAAGATGGTGATGAACATTCTTTGGATTCCTATGCCATGGAACTCTCTGGTCCCAGATGA 1920 0.4406 MAPNWFVLLFFLSRAALCSSSEPRNHEVEALMSIRATLNDPHGVLSNWDEFSVDPCSWTMITCSSDYLVIGLGAPSQSLSGTLSPAIGNLKNLRQVLLQNNNISGKMPTELGELPKLQTLDLSNNRFCGVIPGSLSQLNSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPKFPARSFNVVGNPLICGSSSTEGCSGSATLMPVSFSLASSQGKNKSKKLALALGISLSCVCFVFLFLWLFWYHKKRQHRPILYIEYHQEEGIVSLGNLKKFTFRELQSATDNFSHRNLLGAGGFGNVYRGKLGDGTMVAVKRLKDVTGSAGESQFRTEVEMISLAVHRNLLRLIGYCATPNEKLLIYPFMSNGSVASKLRGKPALDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSDKTDVFGFGILLLELITGMTALEFGKTLNQKGAMLEWVRKIQHEKKVEVLVDKELGSNYDRIEVGEMLQVALLCTQNLPAHRPKMSEVVRMLEGDGLAEKWAASHNHASLSLNTLHCNCSKSLSHPTTASKHDDNNVHDRSSMFGMTMDDEDGDEHSLDSYAMELSGPR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5038g00005 639 Gene3D Transferase(Phosphotransferase) domain 1 370 581 - -
Gabi5038g00005 639 MobiDBLite consensus disorder prediction 597 621 - -
Gabi5038g00005 639 FunFam Somatic embryogenesis receptor kinase 1 263 369 - -
Gabi5038g00005 639 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Gabi5038g00005 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Gabi5038g00005 639 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 573 - -
Gabi5038g00005 639 Gene3D Ribonuclease Inhibitor 24 206 IPR032675 -
Gabi5038g00005 639 SUPERFAMILY L domain-like 24 189 - -
Gabi5038g00005 639 Pfam Protein tyrosine and serine/threonine kinase 296 562 IPR001245 GO:0004672|GO:0006468
Gabi5038g00005 639 Pfam Leucine rich repeat 115 175 IPR001611 GO:0005515
Gabi5038g00005 639 ProSiteProfiles Protein kinase domain profile. 293 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5038g00005 639 FunFam Somatic embryogenesis receptor-like kinase 1 370 581 - -
Gabi5038g00005 639 Gene3D Phosphorylase Kinase; domain 1 263 369 - -
Gabi5038g00005 639 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Gabi5038g00005 639 MobiDBLite consensus disorder prediction 593 626 - -
Gabi5038g00005 639 FunFam Putative LRR receptor-like serine/threonine-protein kinase 24 206 - -
Gabi5038g00005 639 SUPERFAMILY Protein kinase-like (PK-like) 274 563 IPR011009 -
Gabi5038g00005 639 SMART serkin_6 293 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5038g00005 Gabi-Chr5038 93830 98630 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5038g00005 4 639 Receptor kinase-like Gene Family AT5G16000 63.037 0.0 792
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi5038g00005 PK_Tyr_Ser-Thr 1.8e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5038g00005 - - lja:Lj6g3v1048910.1 1085.86