LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi5033g00007	ATGGCAAGGCAAGAATCATTGTTGCCCTCTTCTTCCTTTAGCTTTGGATGGAAATACGATGTGTTTCTCAGCTTCAGAGGAGAAGATACTCGTCACGGTTTCACTGGCTATCTCTACAAAGCTCTTCGTGACAGGGGAATTCACACCTTCATTGATGATGAAGAGCTTCAAAGAGGAGCGGAAATCACACCATCACTTGCCAAGGCAATTGAAGAATCCAGGATTGCCGTCACTGTGTTCTCTAAGAACTATGCTTCTTCTTCATTTTGCTTGAATGAACTTGTCCATATCCTTCACTGTATCAAAGAAAAGGGTCGGTTGGTTTTGCCAGTTTTCTATGACGTTGACCCTTCTCACGTGCGACATCAGAGGGGTAGCTATGAACAAGCAATGGCTAGTCATGAAGAGAGGTTCAAGGACAACAAGGAGAAGCTGCGGAAATGGAGGATGGCTCTGCATCAAGCAGCTAACTTGTCTGGCTTTCATTTTAAACAACAGGGGAATGAGTACGAATATGAGTTTATTGAGAAGATTGCTAAAGTGGTCTCCAACAAGATTAATCGCTCTCCTTTACATGTTGCGGAATATCCAGTTGGATTGGAGTCTAAAGTGCTTAAAATAATCTCTCTTCTCAATGTCGGATCTGATGGAGTCCACATGATAGGGATCCATGGAATTGGTGGCATAGGGAAGACAACCGTTGCTCGAGCAATTTATAATGCTACTGCTGATTCATTTGAAGCTTTGTGTTTTCTTGATAATGTGAGAGAAAATTCAATTAAACATGGATTAGAACATCTCCAAATGACACTTCTTTCTGATTTAGTTGGAGAGAAGGATATTAAGTTATCAAGTGTCAATAAAGGAATTCCAATAATAAAGCATAGGCTCCAGCAGAAGAAGGTTCTTATAGTTCTTGATGATGTTGATAAACGACAGCAATTGCAGGCAACTGTTGGAAAGCCTGATTGGTTTGGTTCTGGTAGCAGAATCATCATTACAACTCGGGACAAGCATTTGCTGAAAAGTCATGAGGTTGAAAGAACGTATGAGGTAGATGGGTTGAATAAAAAAGAAGCTCTTGAATTGCTCTGTCAGAATGCTTTTAGAACTGATAAAATTGATCCTAGTTATGTTGACATTTTAAACCGTGCAGTGACTTATGCTTCTGGACTTCCATTGGCTTTGGAGGTAATAGGTTCCAACTTGTTTGGAAAAAGGATAGAAGAATGGGAATCTGCATTAGATCAGTACAGAAGAATTCCTAATTATGAGATCCAGAACATACTGAAAGTAAGTTTTGATTCTTTGGAGGAAGATCAGAAAAAATTGTTTCTTGATATTGCTTGTTGCTTGAAAGGATATGTTTTGGCATATGTTTATGCTCATCATGATTTTCGCCCAGAATATGGCATTGGAGTGTTGATTGACAAATCTCTCATAAAGATTAATGTATCTGGTCATGTAACATTGCATGACCTGATAGAGGAAATGGGTAAAGAAATTGTCAGACTCGAAGCACCAAGAGAGCTAGGAAAACGTAGTAGATTATGGTTCCCCAATGATATAGTTCAAGTTTTACAAGATAATACAGGAACTAGTAGTATTCAAATCATAATTCTGGAATTCCCAAAATTTGAAGAAGTAGTTGAATGGGATGGAAACGCCTTCAAGAAGATGGAAAACCTCAAAACACTTATTATTAGAAACAGTTGTTTTGCACAAGGTCCCAAACATCTTCCAAATAGTTTGAGAATACTGGAATGGTGGAGATATCCTTCACCATCTTTACCGTCTGATTTTCATCCAGAGAAACTTGTGATACTGAAGTTACCTGAAAGTCGTTCTATTTCAATTGATTTTCTCAAGTCAAATAAGGAGTTTGTGAATATGAGAGTTTTGAATTTTAAAAAATGTGAATGTATTATCGAGATACCTGATGTGTCTGGTGTCCCAAATTTAGAAGAATTATCATTTGAAAAATGTTATAATTTAATTAAAATTCACACATCAGTTGGATTCTTGAATAAACTTAAATTCTTGAACGCTGATTATTGTGAGAAGTTAAGGAGTTTTCCACCCATCAAGTTGACCTCTCTTAAAAAACTCCAACTTTCATATTGTCCGAGTCTTGAGAATTTTCCAGAAATATTAGGAAAGATGGAAAAAATAACAAGGCTTGGTATCACTGACACTCCCATAAAAGAACTACCATTTTCAATTCAAAATCTCACTCAGCTTGAAAGTCTAGAGCTGAGGCGTTGTGGAGTTCTGCAGTTACCAAGGAGCATTTCGACGATGCGAAAACATCTTTTGTTGATTGTTAGGGAATGTGAGGGATTGCTTTTATCTAAACAGGACGAAGGTGAGGCACAACTCATTTATAGTGTTGACCTTTGGGAATGCAATATATCAGACGAATTCATTCGAAAAGGTCTCCCTTTGTTTGCCAATGTGCAACGGTTAAGCCTATCCAAGTGTAATCTCACAATTCTTCCTGCATGCATCAAAGAATGTTGCTTTTTGACAGAATTTTCTTTACTTTCTTGCGAGAATTTTCGGGAAATTGGAGGGATTCCTCCCAACTTAGAAACATTCTCTGTAGTGAAGTGCACATCCTTGAAAGTTTTAGACCTCACACTATTTCCTGAATGTTTGAAGACACTTGCTTTGGTTGAGTGTGGGAATCTTCAAGAAATTAAGGGGATTTCACCCAACATAAGAACTTTGTATGCAGAAGTCTGCCCATCCTTGACATTCGAGTGTACAAGCATGTTACTGAATGAGGAACTGCACGAGAAGGGTGGAGGCAAACTGTTTCTCTTGCCAGAAACAAGGATTCCAGAGTGGTTTGAGCATTGTGTCAGGGGACCGTCAATTTCTTTCTGGTTTCGTAACAAGATCCCTGCGATATCTCTATGTTTTGCTATTCACATTGGATATTATGCCACTTTTCGGCTCAATATTGAAGTCAACGGCATTTCAAAAGACACAGAAGAGGATTTCTATTTGGCTTACAATGCAGGGGATTATACGGTTCTTTCCGATATAAAACAAGATAAATTCTTACTTGACGGAATTTTTTCTGATATAGAAGAAAATAAATGGAATTATGTGGTGTGTACTTTATCAAGCACAGAAGAAACAGTGTTTGTCAAACAAAGTGGAATCCATGTATTCAAACAAGGAAGTCTCATGGAGGACATTCAATTCAGCGATCCACTGTTGCTTAAAGAAGAGCATAGATTGGTGGACATGGCAGACTGTCGGACAATTTATGCAGCACCAAAATAA	3294	0.3813	MARQESLLPSSSFSFGWKYDVFLSFRGEDTRHGFTGYLYKALRDRGIHTFIDDEELQRGAEITPSLAKAIEESRIAVTVFSKNYASSSFCLNELVHILHCIKEKGRLVLPVFYDVDPSHVRHQRGSYEQAMASHEERFKDNKEKLRKWRMALHQAANLSGFHFKQQGNEYEYEFIEKIAKVVSNKINRSPLHVAEYPVGLESKVLKIISLLNVGSDGVHMIGIHGIGGIGKTTVARAIYNATADSFEALCFLDNVRENSIKHGLEHLQMTLLSDLVGEKDIKLSSVNKGIPIIKHRLQQKKVLIVLDDVDKRQQLQATVGKPDWFGSGSRIIITTRDKHLLKSHEVERTYEVDGLNKKEALELLCQNAFRTDKIDPSYVDILNRAVTYASGLPLALEVIGSNLFGKRIEEWESALDQYRRIPNYEIQNILKVSFDSLEEDQKKLFLDIACCLKGYVLAYVYAHHDFRPEYGIGVLIDKSLIKINVSGHVTLHDLIEEMGKEIVRLEAPRELGKRSRLWFPNDIVQVLQDNTGTSSIQIIILEFPKFEEVVEWDGNAFKKMENLKTLIIRNSCFAQGPKHLPNSLRILEWWRYPSPSLPSDFHPEKLVILKLPESRSISIDFLKSNKEFVNMRVLNFKKCECIIEIPDVSGVPNLEELSFEKCYNLIKIHTSVGFLNKLKFLNADYCEKLRSFPPIKLTSLKKLQLSYCPSLENFPEILGKMEKITRLGITDTPIKELPFSIQNLTQLESLELRRCGVLQLPRSISTMRKHLLLIVRECEGLLLSKQDEGEAQLIYSVDLWECNISDEFIRKGLPLFANVQRLSLSKCNLTILPACIKECCFLTEFSLLSCENFREIGGIPPNLETFSVVKCTSLKVLDLTLFPECLKTLALVECGNLQEIKGISPNIRTLYAEVCPSLTFECTSMLLNEELHEKGGGKLFLLPETRIPEWFEHCVRGPSISFWFRNKIPAISLCFAIHIGYYATFRLNIEVNGISKDTEEDFYLAYNAGDYTVLSDIKQDKFLLDGIFSDIEENKWNYVVCTLSSTEETVFVKQSGIHVFKQGSLMEDIQFSDPLLLKEEHRLVDMADCRTIYAAPK	1097

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi5033g00007	1097	SUPERFAMILY	"Winged helix" DNA-binding domain	425	528	IPR036390	-
	Gabi5033g00007	1097	SUPERFAMILY	Toll/Interleukin receptor TIR domain	9	161	IPR035897	-
	Gabi5033g00007	1097	SUPERFAMILY	L domain-like	551	897	-	-
	Gabi5033g00007	1097	PRINTS	Disease resistance protein signature	695	711	-	-
	Gabi5033g00007	1097	PRINTS	Disease resistance protein signature	296	310	-	-
	Gabi5033g00007	1097	PRINTS	Disease resistance protein signature	389	403	-	-
	Gabi5033g00007	1097	PRINTS	Disease resistance protein signature	220	235	-	-
	Gabi5033g00007	1097	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	763	IPR044974	GO:0006952
	Gabi5033g00007	1097	Gene3D	-	183	349	IPR027417	-
	Gabi5033g00007	1097	ProSiteProfiles	TIR domain profile.	17	186	IPR000157	GO:0007165
	Gabi5033g00007	1097	Pfam	NB-ARC domain	203	421	IPR002182	GO:0043531
	Gabi5033g00007	1097	Gene3D	Ribonuclease Inhibitor	720	927	IPR032675	-
	Gabi5033g00007	1097	Gene3D	Ribonuclease Inhibitor	521	719	IPR032675	-
	Gabi5033g00007	1097	Gene3D	-	354	438	IPR042197	-
	Gabi5033g00007	1097	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	448	IPR027417	-
	Gabi5033g00007	1097	SMART	till_3	18	158	IPR000157	GO:0007165
	Gabi5033g00007	1097	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	188	-	-
	Gabi5033g00007	1097	Pfam	TIR domain	18	189	IPR000157	GO:0007165
	Gabi5033g00007	1097	Gene3D	-	15	182	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi5033g00007	Gabi-Chr5033	86671	92479	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi5033g00007	9	771	WRKY Transcription Factor Family	AT4G12020	29.456	1.24e-77	278

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi5033g00007	-		-	gmx:121173697	1307.74