Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5033g00006 ATGGCAAGGCAAGAATCATTGTTGCCCTCTTCTTCCTTTAGCTTTGGATGGAAATATGATGTGTTTCTGAGCTTCAGAGGAGAAGATACTCGTCACGGTTTCACTGGCTATCTCTACAAAGCTCTTCATGACAGGGGAATTCATACCTTCATTGATGATGAAGAGCTTCAAAGAGGAGATCAAATCACACCATCACTTGAAAATGCAATTGAAGAATCCAGGATTGCCATCACTGTGTTCTCTAAGAACTATGCTTCTTCTTCCTTTTGCTTAGATGAACTTGCCCATATCATTCACTGCATCAAGGAAAAGGGTCGGATGGTTTTGCCAATTTTTTACGATGTTGACCCTTCTCACGTGCGACATCAGAGAGGTAGCTATGAAGAAGCAATGGCTTCTCATGATAAGAGGTTTAAGGATGACATGGAGAAGGTGCGAAAATGGAGGATGGCTCTGTGTCAAGCAGCTAATTTGTCTGGCTTTCATTTCAAACAACAAGGGAAAGAGTACGAATATGAGTTTATTGAGAAGATTGTTAAAGTGGTCTCCAACAAGATTAATCACTCTCCTTTATATGTTGCTGATTATCCAGTTGGATTGGAGTCTAAAGTGCTAGAAATAATCTCACTTCTCAATGTGGGATCTGATGGAGTCAACATGTTAGGGATCCATGGAATTGGGGGAATAGGGAAGACAACAGTTGCTCGAGCAGTTTATAATGTGATTGCTGATTCATTTGAAGCTTTGTGTTTTCTTGATAATGTTAGAGAAAATTCAGTTAAACATGGATTAGAACATCTCCAAGAAACACTTCTTTCTGATTTAGTCGGAGAGAAGGACATTAAGTTAGCAAGTGTCAATAAAGGAATTCCAATAATAAAGCATAGGCTCCAGCGGAGGAAGGTTCTTTTAATTCTTGATGATGTTGATAAACGAGAGCAATTGCAGGCAATTGTTGGAAGGCCTGATTGGTTTGGTTCTGGTAGCAGAATCATCATTACAACTCGGGACAAGCATTTGCTGAAAAGTCATAGGATTGAGAGAACATATGAGCTAGATGGGTTGAATAACAAAGAAGCTCTTGAATTGCTTGGTTGGAATGCTTTTAGAACTGACAAAATTGATCCCGATTATGTGGACATTTTAAACCGTGCAGTAACTTATGCTTCTCGACTTCCATTGGCTTTGGAGGTAATAGGTTCCAACTTGTTTGGAAAAAGGATAGAAGAATGGGAATCTGCATTAGATCAGTATGAGAGAATTCCTAATAAAAAGATCCAAAAGATACTTGAAGTAAGTTTTCATTCTTTGGAGGAATATGAGCAGAAAGTATTTCTTGATATTGCTTGTTGCTTCAAAGGAAATGATTTAGCATATGTCAAACAATTACTTTATGCTCATCATGATTTTCGCCCAGAATATGGTATTGGAGTGTTGATTGACAAATCTCTTGTAAAGATTGATGTGTGGGGTTGTGTAACATTGCATGACCTGATAGAGGACATGGGTAAAGAAATTGTCAGACAAGAAGCACCGGAAGAGCCAGGCAAACGTAGTAGATTATGGTCCCTCAATGATATAGTTCAAGTTTTAGAAGATAATAAGGGAACTAGTAGTATTCAAATCATAATGCTGGATTTCCTCAAATTTGAAGAAGCGGTTAAATGGGATGGAAACGCCTTTAAGGAGATGAGAAACCTCAAAACACTTATTATTGGAAAAGGTTGTTTTTCGGAAGGTCCCAAACATCTTCCAAATAGTTTGAAAGTATTGGAATGGTGGAGATATCCCTCACCATCTTTACCATCTAATTTTCATCCAAAAAATCTTGTGATACTGAAGTTACCCCAAAGTCGCTCTATTTCAATTGATTTGCTCATGTCAAATAAGGAGTTTATGAATATGACAGTTCTGAATTTTGATTACTGTCAATGTATTACTGAGATACCTGATGTGGCTGGTGTCCCAAATTTAGAAGAATTATCATTTGAATATTGTGATAATTTAATTGAAATTCACAAATCAGTTGGATTCCTGAATAAACTTAAAATCTTGAAAGCCAATGGTTGCAAGAAGTTTAGGAGTTTTCCACCCATCAAGTTGCCCTCTCTTGATAAACTCGAGCTTTCACACTGTCACAGTCTTGAGAATTTTCCAGAAATATTAGGAGAGATGGAAAAAATAAAATTTCTTCAAATCAGTGACACTCCCATAAAAGAACTTCCATCTTCAATTCAAAACCTCACTCGTCTTCGACTAATGGCCCTGAGTTATTGTCGAGGAGTTGTTCAGTTACCAAGGAGCATTTCAAAGTTGCGAGAACTTGATGATTTGACCTTTTGGGAATGCGAGGGATTGCTTTTATCTAAACAGAATGAAGGTGATGCACAAGTGAGCTCATTGGTGTTTGAGAAGAACACTACAACAAAAATGTCATTTTGCAATATATCAGACAAATTCATTCGAAATGATCTCCCTTTGTTTTGCAGTGTGCAAAGTTTATTCCTAAGCAATAGTAATCTCACAATTCTTCCTGCATACATCAAAAAATGTCTCTATTTGACAGAAATTCTTATTTTGGAAGCTTGCGAGAATCTTCAAGAAATTAGAGGGATTTCACCCAACATAAGAACTTTGCAAGCAACACAATGCTCGTCCTTGACATCCGAGTGTAGAAGCATGTTACTGAATGAGGAATTGCACAAGGAGTGTGGAGACAAAAAGTTTCTCTTGCCAGAAACAAGGATTCCAGAGTGGTTTGAGAACTGTACCAATGGACCCTCAATTTCTTTCTGGTTTTGTAACAAGGTCCCTGCGATATCTCTATGTTTTGCTATTCGACTTGTTTCAGATGGCCCAACTACTAGCGGCCCAATGGCTCAGGCCCAACTCCAGGCTCCAACCCACATCAGCCCTAAGGGCTGA 2925 0.3826 MARQESLLPSSSFSFGWKYDVFLSFRGEDTRHGFTGYLYKALHDRGIHTFIDDEELQRGDQITPSLENAIEESRIAITVFSKNYASSSFCLDELAHIIHCIKEKGRMVLPIFYDVDPSHVRHQRGSYEEAMASHDKRFKDDMEKVRKWRMALCQAANLSGFHFKQQGKEYEYEFIEKIVKVVSNKINHSPLYVADYPVGLESKVLEIISLLNVGSDGVNMLGIHGIGGIGKTTVARAVYNVIADSFEALCFLDNVRENSVKHGLEHLQETLLSDLVGEKDIKLASVNKGIPIIKHRLQRRKVLLILDDVDKREQLQAIVGRPDWFGSGSRIIITTRDKHLLKSHRIERTYELDGLNNKEALELLGWNAFRTDKIDPDYVDILNRAVTYASRLPLALEVIGSNLFGKRIEEWESALDQYERIPNKKIQKILEVSFHSLEEYEQKVFLDIACCFKGNDLAYVKQLLYAHHDFRPEYGIGVLIDKSLVKIDVWGCVTLHDLIEDMGKEIVRQEAPEEPGKRSRLWSLNDIVQVLEDNKGTSSIQIIMLDFLKFEEAVKWDGNAFKEMRNLKTLIIGKGCFSEGPKHLPNSLKVLEWWRYPSPSLPSNFHPKNLVILKLPQSRSISIDLLMSNKEFMNMTVLNFDYCQCITEIPDVAGVPNLEELSFEYCDNLIEIHKSVGFLNKLKILKANGCKKFRSFPPIKLPSLDKLELSHCHSLENFPEILGEMEKIKFLQISDTPIKELPSSIQNLTRLRLMALSYCRGVVQLPRSISKLRELDDLTFWECEGLLLSKQNEGDAQVSSLVFEKNTTTKMSFCNISDKFIRNDLPLFCSVQSLFLSNSNLTILPAYIKKCLYLTEILILEACENLQEIRGISPNIRTLQATQCSSLTSECRSMLLNEELHKECGDKKFLLPETRIPEWFENCTNGPSISFWFCNKVPAISLCFAIRLVSDGPTTSGPMAQAQLQAPTHISPKG 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5033g00006 974 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 188 - -
Gabi5033g00006 974 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Gabi5033g00006 974 Gene3D - 184 348 IPR027417 -
Gabi5033g00006 974 Pfam TIR domain 18 190 IPR000157 GO:0007165
Gabi5033g00006 974 SMART till_3 18 158 IPR000157 GO:0007165
Gabi5033g00006 974 SUPERFAMILY L domain-like 508 893 - -
Gabi5033g00006 974 PRINTS Disease resistance protein signature 389 403 - -
Gabi5033g00006 974 PRINTS Disease resistance protein signature 220 235 - -
Gabi5033g00006 974 PRINTS Disease resistance protein signature 699 715 - -
Gabi5033g00006 974 PRINTS Disease resistance protein signature 296 310 - -
Gabi5033g00006 974 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 448 IPR027417 -
Gabi5033g00006 974 Pfam NB-ARC domain 205 435 IPR002182 GO:0043531
Gabi5033g00006 974 Gene3D - 15 183 IPR035897 -
Gabi5033g00006 974 Gene3D Ribonuclease Inhibitor 718 946 IPR032675 -
Gabi5033g00006 974 ProSiteProfiles TIR domain profile. 17 186 IPR000157 GO:0007165
Gabi5033g00006 974 Gene3D - 354 438 IPR042197 -
Gabi5033g00006 974 Gene3D Ribonuclease Inhibitor 521 717 IPR032675 -
Gabi5033g00006 974 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 803 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5033g00006 Gabi-Chr5033 60712 74823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5033g00006 9 783 WRKY Transcription Factor Family AT4G12020 30.673 4.83e-86 302