Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5032g00001 ATGGCAGAACCATCCACCGCCGAAACCTCCTCCGCCAGCGATGCTCATCCGCCTGCGCCGGCTTCCTCGCCTAAGAGCTGGGTCGACGAAGCAGATGAAGAAACCAACGCAACGCCGATCTCCGAGACAGCAACCTCGTCGCTCAGCGTCGACGGATTAACGATCGACGAGAACAAGAAGCCTTCTCCCAAGTTCTTGGACGAGCCTGAAGACTCCAACATCCAAGCGGTTTCGTCCAGCGACACTCCGTACATGTCAGCTACCACCTTCGAAGAATTGAATCTCTCACTGGAGCTTTTGAAGGGACTCTACGTGGAGATGAAGTTCCATAAACCTAGTAAGATCCAAGACGTAACCTTGCCTATGATCTTGAATCCTTCGAATAGGAATTTGATCGCACAGGCGCATAACGGTTCCGGAAAAACCACGTGTTTCCTTCTTGGTATGCTTAGTCGAGTTGATCCAAAGTTGCAGGCTCCTCAAGCTTTCTGCATCTGCCCAACCAGGGAGTTGGCTATTCAGAATACTGAAGTTCTCCGAAAGATGGGAAAGTACATGGGGATTAGCTCAGAATGTGCTATACCAGCAGACAGTAGTGATGCTTTGCCGATAGCGAAACAGGCACCGATTATGGCTCAAGTGGTTATTGGGACCCCTGGCACGATTAATAAGTGGATGGCTTATAAGAAACTTGGGGTGACAAGGTTGAAGATTCTTGTTTTTGATGAGGCTGATCAAATGCTTGCTGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGGAATAGAAAAAGTCAATTCTAACTGTCAGGTTCTTCTGTTTTCTGCTACATTGAATGACATTGTCCAGAATTTTGTTTCGAGGACAGTTAAGCAGGATTATAATACACTTTTTGTGAAGGAACTATCTTTAGATGCCGTAAAGCAATATAAAGTTCATTGTCCTGATGAACTCTCTAAGATTGAAGTGAAAAAAGAATACATACTCGAAATAGGAGAGAATCTGGGGCAAACTATAATATTTGTGCGCACAAGAAATAGTGCAAAAATGTTACATAAATCACTTGTTGTCGCTCATGTTGTCGCTCCCGTCGCCCCAAGTAAGGGAGTCGACAAGGGAAAAAGGAAAGTGGTGAACATTGTTAAAAGGAAGGTCCGGTCTGCAGCGGACATTCCTGCCGAGGAGCTTGCTAGGAGGACTTGCGGCCCGGTTATTAAGGATGTGCAGGAGAATGCCCAGAGTTTGGCGGTCAACCCTTATGCACCTGAAGTTATTCCTCCTAAACCAACGTATTCTGGAAGGAAGAGGGTTGCTAGCGAGGATTTAAGCTCGCCTAAAGGAGCTAAAACGGTTAGGGTGGAGCCGACTGAAAACCCTGATTGA 1389 0.4629 MAEPSTAETSSASDAHPPAPASSPKSWVDEADEETNATPISETATSSLSVDGLTIDENKKPSPKFLDEPEDSNIQAVSSSDTPYMSATTFEELNLSLELLKGLYVEMKFHKPSKIQDVTLPMILNPSNRNLIAQAHNGSGKTTCFLLGMLSRVDPKLQAPQAFCICPTRELAIQNTEVLRKMGKYMGISSECAIPADSSDALPIAKQAPIMAQVVIGTPGTINKWMAYKKLGVTRLKILVFDEADQMLAEDGFKDDSLRIMKGIEKVNSNCQVLLFSATLNDIVQNFVSRTVKQDYNTLFVKELSLDAVKQYKVHCPDELSKIEVKKEYILEIGENLGQTIIFVRTRNSAKMLHKSLVVAHVVAPVAPSKGVDKGKRKVVNIVKRKVRSAADIPAEELARRTCGPVIKDVQENAQSLAVNPYAPEVIPPKPTYSGRKRVASEDLSSPKGAKTVRVEPTENPD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5032g00001 462 Gene3D - 66 302 IPR027417 -
Gabi5032g00001 462 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 359 - -
Gabi5032g00001 462 MobiDBLite consensus disorder prediction 37 53 - -
Gabi5032g00001 462 MobiDBLite consensus disorder prediction 1 17 - -
Gabi5032g00001 462 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 88 117 IPR014014 GO:0003724
Gabi5032g00001 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 293 IPR027417 -
Gabi5032g00001 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 122 298 IPR014001 -
Gabi5032g00001 462 MobiDBLite consensus disorder prediction 1 80 - -
Gabi5032g00001 462 MobiDBLite consensus disorder prediction 421 462 - -
Gabi5032g00001 462 SMART ultradead3 108 312 IPR014001 -
Gabi5032g00001 462 Pfam DEAD/DEAH box helicase 114 285 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5032g00001 Gabi-Chr5032 2513 7567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5032g00001 89 436 Eukaryotic Initiation Factors Gene Family AT1G72730 32.507 6.24e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5032g00001 K18655 - gmx:100778091 489.189