Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5031g00003 ATGGGGCACTGCTTCACCAAACAGCACAGCAACAACAGAGTACCAATCAACTATGTCTCTGATTCACCATCCCATCCTTACCATCAATTTCCACAAAGAACCCAACAACAACCTCAGCCTCAACCTCAACCTCAACCTCGTTACCCATATCATGCTCCAAATTCAGACCCATCTCCATCTCAAACTGCATCATCATCGTCATTATTATCCGCTGGTCAACCTATATTAGGCAAACCATACATTGATATTAAGGTTCTTTACACTCTTGAGAAGGAACTTGGAAGGGGTCAATTTGGTATCACTTATCTTTGCATCGAAAAGGCCACAAAACGAAAGTATGCTTGTAAGTCCATTGCAAGGAGAAAGCTAACTAGAAAGAAGGAAATTGAGGATGTTAAGAGGGAAATTATGATCCTTCAGCACCTAACGGGACAACCCAACATCGTTGAGTTCAAGGGTGCTTATGAGGATAAGCAAAATGTGTATTTGGTGATGGAGTTGTGTCAGGGTGGTGAGCTTTTTGATAGGATCATTGCAAAGGGTATTTACTCTGAGGGTGAAGCTGCCTCTATATTCAAACAAATTGTGAATGTGGTTCATGCTTGTCATTTTATGGGGGTGATGCATAGGGACCTTAAGCCCGAGAATTTCTTGCTTGCTAGTAAAGATGAAAAGGCACCCTTGAAAGCCGCAGATTTTGGTTTGTCTGTCTTCATTGAAGAAGGGAAAATGTATAAAGAAGTTGTTGGAAGTGCATACTACATAGCTCCAGAGGTATTAAAACGGAATTATGGAAAAGAGATAGATGTGTGGAGTGCAGGAGTTATTTTATACATCCTCCTAAGTGGGGGGCCTCCATTTTGGGCTGAAACCGAGAAAGGCATATTTGAAGCTATTTTGGGAGGTAAGCTCAATCTGGAGAGCGCACCATGGCCTTCTATTTCAGAAGCTGCAAAAGATTTGATAAGGAAAATGTTGACTCTTGATCCCAAGAACCGTATTACAGCTTCTGATGCCCTTGAACACCAATGGATGAAGGAAGGTGGTGAAGCATCTGACAGGCCTTTAGACAATGCTGTTTTAATTAGGCTGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGAGGAAGAAATCATAGGCTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACGTATGAAGAACTCAAATCTGGATTGTCCAGATTGGGATCCAAGCTAAGTGAATCTGAAATAAAGCAGCTAATGGATGCTGCTGATGTTGACCAAAGCGGGACTATTGACTATCAGGAATTCATTACTGCCACTATAAACCGACATAAACTTGAGAAGGAAGACATTTTGTTTAAGGCTTTTCAATACTTTGACAAGGATAACAACGGTTATATAACAAGAGATGAGCTTAGACAAGCTTTGACTAAATATCAAATGGGAGATGAAGCAACAATTGATGAAGTCATCGATGATGTTGACACTGACAAAGATGGTAACATTAATTACCAGGAGTTTGTAGCTATGATGAGAAAGGGGACCCTGAATAATTATGAAAAAGACAAACCACAATAA 1617 0.4026 MGHCFTKQHSNNRVPINYVSDSPSHPYHQFPQRTQQQPQPQPQPQPRYPYHAPNSDPSPSQTASSSSLLSAGQPILGKPYIDIKVLYTLEKELGRGQFGITYLCIEKATKRKYACKSIARRKLTRKKEIEDVKREIMILQHLTGQPNIVEFKGAYEDKQNVYLVMELCQGGELFDRIIAKGIYSEGEAASIFKQIVNVVHACHFMGVMHRDLKPENFLLASKDEKAPLKAADFGLSVFIEEGKMYKEVVGSAYYIAPEVLKRNYGKEIDVWSAGVILYILLSGGPPFWAETEKGIFEAILGGKLNLESAPWPSISEAAKDLIRKMLTLDPKNRITASDALEHQWMKEGGEASDRPLDNAVLIRLKQFRAMNKMKKLALKVIAENLSEEEIIGLKQMFNNMDTDRSGTITYEELKSGLSRLGSKLSESEIKQLMDAADVDQSGTIDYQEFITATINRHKLEKEDILFKAFQYFDKDNNGYITRDELRQALTKYQMGDEATIDEVIDDVDTDKDGNINYQEFVAMMRKGTLNNYEKDKPQ 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5031g00003 538 MobiDBLite consensus disorder prediction 37 53 - -
Gabi5031g00003 538 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Gabi5031g00003 538 Gene3D Phosphorylase Kinase; domain 1 89 172 - -
Gabi5031g00003 538 ProSiteProfiles EF-hand calcium-binding domain profile. 496 530 IPR002048 GO:0005509
Gabi5031g00003 538 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Gabi5031g00003 538 ProSitePatterns EF-hand calcium-binding domain. 437 449 IPR018247 -
Gabi5031g00003 538 SMART serkin_6 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00003 538 ProSiteProfiles Protein kinase domain profile. 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00003 538 Gene3D - 353 530 - -
Gabi5031g00003 538 MobiDBLite consensus disorder prediction 1 36 - -
Gabi5031g00003 538 SUPERFAMILY EF-hand 384 525 IPR011992 -
Gabi5031g00003 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gabi5031g00003 538 ProSiteProfiles EF-hand calcium-binding domain profile. 424 459 IPR002048 GO:0005509
Gabi5031g00003 538 Pfam EF-hand domain pair 465 525 IPR002048 GO:0005509
Gabi5031g00003 538 Pfam EF-hand domain pair 393 453 IPR002048 GO:0005509
Gabi5031g00003 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 85 520 - -
Gabi5031g00003 538 MobiDBLite consensus disorder prediction 1 69 - -
Gabi5031g00003 538 SMART efh_1 392 420 IPR002048 GO:0005509
Gabi5031g00003 538 SMART efh_1 499 527 IPR002048 GO:0005509
Gabi5031g00003 538 SMART efh_1 428 456 IPR002048 GO:0005509
Gabi5031g00003 538 SMART efh_1 464 492 IPR002048 GO:0005509
Gabi5031g00003 538 CDD STKc_CAMK 87 344 - -
Gabi5031g00003 538 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gabi5031g00003 538 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00003 538 FunFam calcium-dependent protein kinase 1 173 352 - -
Gabi5031g00003 538 ProSitePatterns EF-hand calcium-binding domain. 473 485 IPR018247 -
Gabi5031g00003 538 ProSitePatterns EF-hand calcium-binding domain. 508 520 IPR018247 -
Gabi5031g00003 538 FunFam Calcium-dependent protein kinase 1 353 528 - -
Gabi5031g00003 538 ProSiteProfiles EF-hand calcium-binding domain profile. 460 495 IPR002048 GO:0005509
Gabi5031g00003 538 Gene3D Transferase(Phosphotransferase) domain 1 173 352 - -
Gabi5031g00003 538 FunFam Calcium-dependent protein kinase 1 89 172 - -
Gabi5031g00003 538 SUPERFAMILY Protein kinase-like (PK-like) 87 354 IPR011009 -
Gabi5031g00003 538 MobiDBLite consensus disorder prediction 54 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5031g00003 Gabi-Chr5031 13604 18885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5031g00003 1 527 EF-hand Containing Proteins AT3G20410 63.519 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi5031g00003 Pkinase 1.7e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5031g00003 K13412 - qsa:O6P43_018724 749.584