Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5031g00002 ATGGGGCACTGCTTCACCAAACAGCACAGCAACAACAGAGTACCAATCAACTATGTCTCTGATTCACCATCCCATCCTTACCATCAATTTCCACAAAGAACCCAACAACAACCTCAGCCTCAACCTCAACCTCAACCTCGTTACCCATATCATGCTCCAAATTCAGACCCATCTCCATCTCAAACTGCATCATCATCGTCATTATTATCCGCTGGTCAACCTATATTAGGCAAACCATACATTGATATTAAGGTTCTTTACACTCTTGAGAAGGAACTTGGAAGGGGTCAATTTGGTATCACTTATCTTTGCATCGAAAAGGCCACAAAACGAAAGTATGCTTGTAAGTCCATTGCAAGGAGAAAGCTAACTAGAAAGAAGGAAATTGAGGATGTTAAGAGGGAAATTATGATCCTTCAGCACCTAACGGGACAACCCAACATCGTTGAGTTCAAGGGTGCTTATGAGGATAAGCAAAATGTGTATTTGGTGATGGAGTTGTGTCAGGGTGGTGAGCTTTTTGATAGGATCATTGCAAAGGGTATTTACTCTGAGGGTGAAGCTGCCTCTATATTCAAACAAATTGTGAATGTGGTTCATGCTTGTCATTTTATGGGGGTGATGCATAGGGACCTTAAGCCCGAGAATTTCTTGCTTGCTAGTAAAGATGAAAAGGCACCCTTGAAAGCCGCAGATTTTGGTTTGTCTGTCTTCATTGAAGAAGGGAAAATGTATAAAGAAGTTGTTGGAAGTGCATACTACATAGCTCCAGAGGTATTAAAACGGAATTATGGAAAAGAGATAGATGTGTGGAGTGCAGGAGTTATTTTATACATCCTCCTAAGTGGGGGGCCTCCATTTTGGGCTGAACACCAATGGATGAAGGAAGGTGGTGAAGCATCTGACAGGCCTTTAGACAATGCTGTTTTAATTAGGCTGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGAGGAAGAAATCATAGGCTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACGTATGAAGAACTCAAATCTGGATTGTCCAGATTGGGATCCAAGCTAAGTGAATCTGAAATAAAGCAGCTAATGGATGCTGCTGATGTTGACCAAAGCGGGACTATTGACTATCAGGAATTCATTACTGCCACTATAAACCGACATAAACTTGAGAAGGAAGACATTTTGTTTAAGGCTTTTCAATACTTTGACAAGGATAACAACGGTTATATAACAAGAGATGAGCTTAGACAAGCTTTGACTAAATATCAAATGGGAGATGAAGCAACAATTGATGAAGTCATCGATGATGTTGACACTGACAAAGATGGTAACATTAATTACCAGGAGTTTGTAGCTATGATGAGAAAGGGGACCCTGAATAATTATGAAAAAGACAAACCACAATAA 1464 0.4003 MGHCFTKQHSNNRVPINYVSDSPSHPYHQFPQRTQQQPQPQPQPQPRYPYHAPNSDPSPSQTASSSSLLSAGQPILGKPYIDIKVLYTLEKELGRGQFGITYLCIEKATKRKYACKSIARRKLTRKKEIEDVKREIMILQHLTGQPNIVEFKGAYEDKQNVYLVMELCQGGELFDRIIAKGIYSEGEAASIFKQIVNVVHACHFMGVMHRDLKPENFLLASKDEKAPLKAADFGLSVFIEEGKMYKEVVGSAYYIAPEVLKRNYGKEIDVWSAGVILYILLSGGPPFWAEHQWMKEGGEASDRPLDNAVLIRLKQFRAMNKMKKLALKVIAENLSEEEIIGLKQMFNNMDTDRSGTITYEELKSGLSRLGSKLSESEIKQLMDAADVDQSGTIDYQEFITATINRHKLEKEDILFKAFQYFDKDNNGYITRDELRQALTKYQMGDEATIDEVIDDVDTDKDGNINYQEFVAMMRKGTLNNYEKDKPQ 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5031g00002 487 SUPERFAMILY Protein kinase-like (PK-like) 87 293 IPR011009 -
Gabi5031g00002 487 MobiDBLite consensus disorder prediction 37 53 - -
Gabi5031g00002 487 ProSitePatterns EF-hand calcium-binding domain. 350 362 IPR018247 -
Gabi5031g00002 487 CDD STKc_CAMK 87 292 - -
Gabi5031g00002 487 ProSiteProfiles EF-hand calcium-binding domain profile. 337 372 IPR002048 GO:0005509
Gabi5031g00002 487 ProSiteProfiles EF-hand calcium-binding domain profile. 445 479 IPR002048 GO:0005509
Gabi5031g00002 487 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Gabi5031g00002 487 ProSiteProfiles Protein kinase domain profile. 87 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00002 487 Gene3D Transferase(Phosphotransferase) domain 1 173 301 - -
Gabi5031g00002 487 MobiDBLite consensus disorder prediction 1 36 - -
Gabi5031g00002 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gabi5031g00002 487 FunFam Maternal embryonic leucine zipper kinase 78 334 - -
Gabi5031g00002 487 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Gabi5031g00002 487 Pfam EF-hand domain pair 414 474 IPR002048 GO:0005509
Gabi5031g00002 487 Pfam EF-hand domain pair 342 402 IPR002048 GO:0005509
Gabi5031g00002 487 FunFam Calcium-dependent protein kinase 1 89 172 - -
Gabi5031g00002 487 MobiDBLite consensus disorder prediction 1 69 - -
Gabi5031g00002 487 FunFam Calcium-dependent protein kinase 1 302 477 - -
Gabi5031g00002 487 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gabi5031g00002 487 SMART efh_1 448 476 IPR002048 GO:0005509
Gabi5031g00002 487 SMART efh_1 413 441 IPR002048 GO:0005509
Gabi5031g00002 487 SMART efh_1 341 369 IPR002048 GO:0005509
Gabi5031g00002 487 SMART efh_1 377 405 IPR002048 GO:0005509
Gabi5031g00002 487 Gene3D Phosphorylase Kinase; domain 1 89 172 - -
Gabi5031g00002 487 PANTHER SERINE/THREONINE-PROTEIN KINASE 290 469 - -
Gabi5031g00002 487 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Gabi5031g00002 487 Gene3D - 302 479 - -
Gabi5031g00002 487 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Gabi5031g00002 487 ProSitePatterns EF-hand calcium-binding domain. 457 469 IPR018247 -
Gabi5031g00002 487 SUPERFAMILY EF-hand 333 474 IPR011992 -
Gabi5031g00002 487 Pfam Protein kinase domain 87 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00002 487 SMART serkin_6 87 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00002 487 MobiDBLite consensus disorder prediction 54 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5031g00002 Gabi-Chr5031 13603 18885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5031g00002 1 476 EF-hand Containing Proteins AT3G20410 57.222 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi5031g00002 Pkinase 5.7e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5031g00002 K13412 - qsa:O6P43_018724 645.966