Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5031g00001 ATGGGGCACTGCTTCACCAAACAGCACAGCAACAACAGAGTACCAATCAACTATGTCTCTGATTCACCATCCCATCCTTACCATCAATTTCCACAAAGAACCCAACAACAACCTCAGCCTCAACCTCAACCTCAACCTCGTTACCCATATCATGCTCCAAATTCAGACCCATCTCCATCTCAAACTGCATCATCATCGTCATTATTATCCGCTGGTCAACCTATATTAGGCAAACCATACATTGATATTAAGGTTCTTTACACTCTTGAGAAGGAACTTGGAAGGGGTCAATTTGGTATCACTTATCTTTGCATCGAAAAGGCCACAAAACGAAAGTATGCTTGTAAGTCCATTGCAAGGAGAAAGCTAACTAGAAAGAAGGAAATTGAGGATGTTAAGAGGGAAATTATGATCCTTCAGCACCTAACGGGACAACCCAACATCGTTGAGTTCAAGGGTGCTTATGAGGATAAGCAAAATGTGTATTTGGTGATGGAGTTGTGTCAGGGTGGTGAGCTTTTTGATAGGATCATTGCAAAGGGTATTTACTCTGAGGGTGAAGCTGCCTCTATATTCAAACAAATTGTGAATGTGGTTCATGCTTGTCATTTTATGGGGGTGATGCATAGGGACCTTAAGCCCGAGAATTTCTTGCTTGCTAGTAAAGATGAAAAGGCACCCTTGAAAGCCGCAGATTTTGGTTTGTCTGTCTTCATTGAAGAAGGGAAAATGTATAAAGAAGTTGTTGGAAGTGCATACTACATAGCTCCAGAGGTATTAAAACGGAATTATGGAAAAGAGATAGATGTGTGGAGTGCAGGAGTTATTTTATACATCCTCCTAAGTGGGGGGCCTCCATTTTGGGCTGAAACCGAGAAAGGCATATTTGAAGCTATTTTGGGAGGTAAGCTCAATCTGGAGAGCGCACCATGGCCTTCTATTTCAGAAGCTGCAAAAGATTTGATAAGGAAAATGTTGACTCTTGATCCCAAGAACCGTATTACAGCTTCTGATGCCCTTGAACACCAATGGATGAAGGAAGGTGGTGAAGCATCTGACAGGCCTTTAGACAATGCTGTTTTAATTAGGCTGAAACAGTTCAGAGCAATGAACAAGATGAAGAAACTTGCTTTAAAGGTAATAGCAGAAAACCTTTCAGAGGAAGAAATCATAGGCTTGAAACAAATGTTCAACAATATGGATACTGATCGCAGTGGCACAATCACGTATGAAGAACTCAAATCTGGATTGTCCAGATTGGGATCCAAGCTAAGTGAATCTGAAATAAAGCAGCTAATGGATGCTGTAAGTTTAGATCATGCAAGAATTAATAAATTATGGTGCACACTCTTCTTTCTTCATATGTTTGCTCAGGCTGATGTTGACCAAAGCGGGACTATTGACTATCAGGAATTCATTACTGCCACTATAAACCGACATAAACTTGAGAAGGAAGACATTTTGTTTAAGGCTTTTCAATACTTTGACAAGGATAACAACGGTTATATAACAAGAGATGAGCTTAGACAAGCTTTGACTAAATATCAAATGGGAGATGAAGCAACAATTGATGAAGTCATCGATGATGTTGACACTGACAAAGATGGTAACATTAATTACCAGGAGTTTGTAGCTATGATGAGAAAGGGGACCCTGAATAATTATGAAAAAGACAAACCACAATAA 1686 0.3992 MGHCFTKQHSNNRVPINYVSDSPSHPYHQFPQRTQQQPQPQPQPQPRYPYHAPNSDPSPSQTASSSSLLSAGQPILGKPYIDIKVLYTLEKELGRGQFGITYLCIEKATKRKYACKSIARRKLTRKKEIEDVKREIMILQHLTGQPNIVEFKGAYEDKQNVYLVMELCQGGELFDRIIAKGIYSEGEAASIFKQIVNVVHACHFMGVMHRDLKPENFLLASKDEKAPLKAADFGLSVFIEEGKMYKEVVGSAYYIAPEVLKRNYGKEIDVWSAGVILYILLSGGPPFWAETEKGIFEAILGGKLNLESAPWPSISEAAKDLIRKMLTLDPKNRITASDALEHQWMKEGGEASDRPLDNAVLIRLKQFRAMNKMKKLALKVIAENLSEEEIIGLKQMFNNMDTDRSGTITYEELKSGLSRLGSKLSESEIKQLMDAVSLDHARINKLWCTLFFLHMFAQADVDQSGTIDYQEFITATINRHKLEKEDILFKAFQYFDKDNNGYITRDELRQALTKYQMGDEATIDEVIDDVDTDKDGNINYQEFVAMMRKGTLNNYEKDKPQ 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5031g00001 561 MobiDBLite consensus disorder prediction 37 53 - -
Gabi5031g00001 561 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Gabi5031g00001 561 SUPERFAMILY EF-hand 369 549 IPR011992 -
Gabi5031g00001 561 SUPERFAMILY Protein kinase-like (PK-like) 87 346 IPR011009 -
Gabi5031g00001 561 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Gabi5031g00001 561 Gene3D - 386 440 - -
Gabi5031g00001 561 Gene3D - 363 385 - -
Gabi5031g00001 561 ProSitePatterns EF-hand calcium-binding domain. 460 472 IPR018247 -
Gabi5031g00001 561 Pfam Protein kinase domain 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00001 561 Pfam EF hand 393 419 IPR002048 GO:0005509
Gabi5031g00001 561 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Gabi5031g00001 561 SMART serkin_6 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00001 561 Gene3D - 454 483 - -
Gabi5031g00001 561 ProSiteProfiles Protein kinase domain profile. 87 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5031g00001 561 MobiDBLite consensus disorder prediction 1 36 - -
Gabi5031g00001 561 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Gabi5031g00001 561 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Gabi5031g00001 561 MobiDBLite consensus disorder prediction 1 69 - -
Gabi5031g00001 561 SMART efh_1 392 420 IPR002048 GO:0005509
Gabi5031g00001 561 SMART efh_1 522 550 IPR002048 GO:0005509
Gabi5031g00001 561 SMART efh_1 451 479 IPR002048 GO:0005509
Gabi5031g00001 561 SMART efh_1 487 515 IPR002048 GO:0005509
Gabi5031g00001 561 FunFam Calmodulin 1 448 550 - -
Gabi5031g00001 561 Pfam EF-hand domain pair 488 548 IPR002048 GO:0005509
Gabi5031g00001 561 FunFam calcium-dependent protein kinase 1 173 352 - -
Gabi5031g00001 561 CDD STKc_CAMK 87 344 - -
Gabi5031g00001 561 Pfam EF hand 455 474 IPR002048 GO:0005509
Gabi5031g00001 561 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524
Gabi5031g00001 561 FunFam Calcium-dependent protein kinase 1 89 172 - -
Gabi5031g00001 561 Gene3D Transferase(Phosphotransferase) domain 1 173 353 - -
Gabi5031g00001 561 Gene3D Phosphorylase Kinase; domain 1 89 172 - -
Gabi5031g00001 561 ProSiteProfiles EF-hand calcium-binding domain profile. 452 482 IPR002048 GO:0005509
Gabi5031g00001 561 Gene3D - 484 547 - -
Gabi5031g00001 561 ProSiteProfiles EF-hand calcium-binding domain profile. 519 553 IPR002048 GO:0005509
Gabi5031g00001 561 MobiDBLite consensus disorder prediction 54 69 - -
Gabi5031g00001 561 PANTHER SERINE/THREONINE-PROTEIN KINASE 85 543 - -
Gabi5031g00001 561 ProSitePatterns EF-hand calcium-binding domain. 531 543 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5031g00001 Gabi-Chr5031 13600 18885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5031g00001 1 550 EF-hand Containing Proteins AT3G20410 60.924 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi5031g00001 Pkinase 1.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5031g00001 K13412 - qsa:O6P43_018724 736.487