Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5030g00011 ATGGAAGCTTTTGCCCCACAGAGGATAACTGATGGTGCAATTGGAAGTGGGTATGCTCCATCTTCATCTCTGGTTTTGGATAGAGAGAGGGGAGAGCTTGTGGAGGCCCCTATGAAGTTGGAACGCAAGGGTGTGTCCCCTGAGAGAAGTATTGAAGCTTTGAGGAACCATAGTGAGGCAGAGCGGAAGAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCAGTGTTATTCCAGGTGCTAAGAAGATGGACAAAGCATCTTTACTGGCTGAGGTTATTAGACACATGAAGGATCTGAAAACAAATGCTGCACAAGCTAGTGAAGGCTTAATGATACCAAAGGACAATGATGAAGTAAGAGTTGAAGAACAGGAGGGTGGGTTGAATGGTTTCCCTTTTTCAATAAGGGCATCACTATGTTGTGAATACAAACCTGGTTTATTGTCTGAAATAAGACAAGCACTTGATGCACTTCATCTTATGATCAGAAGGGCAGAGATTGCAACCTTGGGTGGCAGGATGAAGAATGTCTTTGTGATAATTAGCTGCAAAGAACAGAACTTTGAAGATGCTGAATACCGTCAATTTCTTGCTGGCTCAGTTCACCAAGCTCTTAGTTCTGTACTTGATAGATTTTCTGTTTCACAGGATATCTCAGAAACCAGAAAGAGAAGGAGGATTTCTATATTCAGTTCATCATCTTTAGGAGATTTCTTGTGA 726 0.4215 MEAFAPQRITDGAIGSGYAPSSSLVLDRERGELVEAPMKLERKGVSPERSIEALRNHSEAERKRRARINAHLDTLRSVIPGAKKMDKASLLAEVIRHMKDLKTNAAQASEGLMIPKDNDEVRVEEQEGGLNGFPFSIRASLCCEYKPGLLSEIRQALDALHLMIRRAEIATLGGRMKNVFVIISCKEQNFEDAEYRQFLAGSVHQALSSVLDRFSVSQDISETRKRRRISIFSSSSLGDFL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5030g00011 241 CDD bHLH_AtAIG1_like 48 123 - -
Gabi5030g00011 241 Gene3D - 48 110 IPR036638 GO:0046983
Gabi5030g00011 241 SMART finulus 58 107 IPR011598 GO:0046983
Gabi5030g00011 241 PANTHER TRANSCRIPTION FACTOR BHLH30 20 233 IPR045847 GO:0003700|GO:0006355
Gabi5030g00011 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
Gabi5030g00011 241 SUPERFAMILY ACT-like 140 215 IPR045865 -
Gabi5030g00011 241 Pfam Helix-loop-helix DNA-binding domain 56 101 IPR011598 GO:0046983
Gabi5030g00011 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 55 107 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5030g00011 Gabi-Chr5030 73690 75945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5030g00011 39 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.796 1.71e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi5030g00011 HLH 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5030g00011 - - lja:Lj3g3v2848980.1 394.43