Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi5029g00028 | ATGAATACCAAGGGCATCGATTTCGATACAGACAAAGTTCTGGCGAGGGAGTTCCTTTCCAACTTCGCAGATGCCAATGGCGAAGCCAGATACATGAACATCCTGCAAGACGTTGCAAACCACAAAACTCGAGCAATCCAGATCGATCTTCAGGACTTTGTTAATTATAAAGATCTAGACAAAGAATTTCTGAGGCGTGTGACTGAGAATACTCGAAGGTATATTGGGATTTTCGCTGATGCAATCGACGATCTCATGCCGGAGCCCACCGAGGCCTTCACCGATGATGACCACGACATATTGATGACTCAGAGATCTGACGAAGGACCAGAAGGTGCTGATGAGTCTGACCCGCTTCAGAAGATGCCTCCTGAAATCAAGCGCTACTATGAAGTTTATATTAGAGCATCTTCAAAAGGGAGACCATTTACAATTAGGGAGGTGAAGGCTTCGTACATTGGTCAGCTTGTAAGGATATCTGGTATAGTTACGCGTTGCTCGGATGTCAAACCATTGATGCAGGTGGCTGTATACACATGTGAGGATTGTGGTTTTGAAATTTACCAGGAAGTAACAGCTCGAGTCTTTATGCCTTTGTTTGAGTGTCCATCGAGGCGCTGTAGCACGAATAGAAGTAAGGGGAACGTCATACTTCAACTGAGAGCATCAAAGTTTTTGAGATTTCAAGAGGCAAAAATTCAAGAGTTAGCTGAACATGTTCCAAAAGGCCATATTCCACGAACAATGACTGTTCATTTCAGGGGAGAACTCACAAGAAAGGTGGCTCCAGGTGATGTGGTTGAATTATCTGGGATTTTTCTTCCTATACCTTACACTGGTTATAGAGCAATGCGTGCCGGCCTAGTTGCTGACACTTACTTAGAGGCCATGTCTGTTACTCATTTCAAGAAAAAATATGAAGAATATGAACTTAGAGGAGATGAGGAAGAGCAGATTGCACGTTTAGCAGAAGATGGTGACATCTATAATAAGTTGGCACGATCACTGGCACCTGAAATTTTTGGACATGAAGATATTAAAAAGGCTCTGCTTCTTCTCCTTGTTGGTGCTCCCCATCGGAAGTTGAAAGATGGGATGAAGATTAGAGGAGATTTACATATATGTTTGATGGGTGATCCGGGAGTTGCCAAGAGTCAGCTTCTTAAACACATAATCAATGTAGCACCAAGGGCGGTGTACACCACTGGTAGAGGAAGTAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAAAGATCCAGTAACAAATGAGATGGTTCTAGAAGGTGGAGCACTGGTGCTGGCAGATATGGGCATATGCGCCATTGATGAATTTGACAAGATGGATGAATCGGATCGTACAGCCATACATGAAGTTATGGAACAGCAGACTGTTAGCATTGCCAAGGCTGGGATCACTACATCGCTGAATGCAAGGACTGCTGTCCTTGCTGCAGCTAATCCAGCATGGGGAAGATATGATCTACGAAGAACTCCCGCTGAAAATATTAATCTTCCACCTGCCCTCCTATCAAGGTTTGATCTGCTGTGGTTAATTCTTGATCGAGCTGATATGGATAATGATCTTGAACTGGCTAGGCATGTTGTCTATGTCCACCAAAATAAAGAGTCTCCCGCTCTAGGATTCACTCCTCTTGAACCTTCTGTTCTCCGTGCATATATATCATCCGCAAGAAGATGGTCTCCTAGTGTTCCAAGGGAACTGGAAGAGTATATTGCTAGTGCATACTCCGGCATTCGTCAAGAAGAAGCAAATTCTAAAATTCCGCATTCCTATACGACTGTCAGAACACTGCTCAGTATTCTCCGCATATCAGCTGCGCTAGCAAGGCTCCGTTTTTCCGGAACTGTTGCTCAGAGTGATGTGGACGAAGCACTGAGATTAATGCAGATGTCAAAATTCTCCTTGTACTCTGATGAGCGTCAAAGGTCTGGTCTGGATCCCATATCTGATATTTATTCCATACTGCGAGATGAAGCTGCTAGAAGTAACCGAATGGATGTCAGCTATGCTCATGCACTGAATTGGATATCTAGGAAGGGGTGCAGCGAAGCCCAGTTGAAAGAGTGTTTAGAGGAGTATGCAGCATTAAATGTATGGCAGATACATCCCCACTCCTTCGATATACGATTTATTGATGCTTGA | 2163 | 0.4406 | MNTKGIDFDTDKVLAREFLSNFADANGEARYMNILQDVANHKTRAIQIDLQDFVNYKDLDKEFLRRVTENTRRYIGIFADAIDDLMPEPTEAFTDDDHDILMTQRSDEGPEGADESDPLQKMPPEIKRYYEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSRRCSTNRSKGNVILQLRASKFLRFQEAKIQELAEHVPKGHIPRTMTVHFRGELTRKVAPGDVVELSGIFLPIPYTGYRAMRAGLVADTYLEAMSVTHFKKKYEEYELRGDEEEQIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRAVYTTGRGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLELARHVVYVHQNKESPALGFTPLEPSVLRAYISSARRWSPSVPRELEEYIASAYSGIRQEEANSKIPHSYTTVRTLLSILRISAALARLRFSGTVAQSDVDEALRLMQMSKFSLYSDERQRSGLDPISDIYSILRDEAARSNRMDVSYAHALNWISRKGCSEAQLKECLEEYAALNVWQIHPHSFDIRFIDA | 720 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi5029g00028 | 720 | SUPERFAMILY | Nucleic acid-binding proteins | 15 | 296 | IPR012340 | - | |
| Gabi5029g00028 | 720 | ProSiteProfiles | MCM family domain profile. | 328 | 534 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | Gene3D | - | 313 | 645 | IPR027417 | - | |
| Gabi5029g00028 | 720 | CDD | MCM7 | 331 | 638 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi5029g00028 | 720 | Gene3D | - | 172 | 226 | - | - | |
| Gabi5029g00028 | 720 | Gene3D | - | 145 | 273 | IPR012340 | - | |
| Gabi5029g00028 | 720 | SMART | mcm | 141 | 640 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | FunFam | DNA replication licensing factor MCM7 | 313 | 645 | - | - | |
| Gabi5029g00028 | 720 | Pfam | MCM AAA-lid domain | 555 | 638 | IPR041562 | - | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 287 | 297 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 195 | 207 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 160 | 171 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 178 | 189 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 122 | 134 | IPR008050 | GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555 | |
| Gabi5029g00028 | 720 | FunFam | DNA replication licensing factor MCM7 | 11 | 102 | - | - | |
| Gabi5029g00028 | 720 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 338 | 648 | IPR027417 | - | |
| Gabi5029g00028 | 720 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 17 | 648 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | FunFam | DNA replication licensing factor MCM7 | 172 | 226 | - | - | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 508 | 516 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 429 | 443 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 481 | 493 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 457 | 470 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 369 | 384 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Gabi5029g00028 | 720 | ProSitePatterns | MCM family signature. | 437 | 445 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Gabi5029g00028 | 720 | Gene3D | - | 12 | 103 | - | - | |
| Gabi5029g00028 | 720 | Pfam | MCM N-terminal domain | 16 | 134 | IPR027925 | - | |
| Gabi5029g00028 | 720 | Pfam | MCM OB domain | 145 | 275 | IPR033762 | - | |
| Gabi5029g00028 | 720 | Pfam | MCM P-loop domain | 316 | 538 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi5029g00028 | Gabi-Chr5029 | 128078 | 133692 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi5029g00028 | 4 | 718 | Core DNA Replication Machinery Family | AT4G02060 | 83.636 | 0.0 | 1249 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi5029g00028 | K02210 | - | qsu:112007744 | 1316.6 |