Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5029g00018 ATGATTCCACAGGAAAGAATTAAGAGTAACGGGAAGATTGTAAAACATCACGTTTCAATAGTCTTGTCAGCAATATCAAGAAAAGCCCCATTGCAGACAGAGGAAAATACCAATCAAATGCTTTCTTCAAGAATTGACCGTCCTCTATGTAAGTTCAGCGGTTTCTCTCAAGGTTCAGGAGACAAAGACCACGTTAACAGTCGGAACATATTATCTGAAACAAGTATCAAGATTCCATACATCGAAAGATTACCACCATATACATTTTGGATACATTTGGCCAGAAATCAGAGAATGGCCGAAGATCAATCAGTTGTTGGAAGAAGACGTATATACTATGATCAACATGGAAGTGAAGCCCTGGTATGCAGTGACTCTGATGAAGAGTTATCAGTACCCAAGGAAGTTAAACACAACTTTTCTGAGGGTGAAGACCGACTTCTTTGGATGGCATTTGAGGAACATGGGTTAACTGAGGAGGTATTGAATATTGTCAGACAGTTTGTTGGGGGTACTAGTTCAGAAATTCAGGAGAGGTACAAAAATCTCAAGGAAAAGAATATGAGAAAGTGGGACCAGCATTCTGAAGATTCTGGACGATGTGATTCTCATATTGGCATATGTTTGGAGAAAAGCTTGAGTGCCACTTTAGACTCCTTTGATAACCTTTTCTGTCGCCGGTGCATTAAGATTTTTGACTGTCCTCTGCATGGCTGTTCTCAACCTTTAATATATCCTAGTGAAAAGCAGCTAGTTTGGTCTGAACCTGAAGATGACAGGAAACCATGCAGTGATCAGTGTTACCTGCAGTTAAAGGATGTCAATATTTTGTCTGAAGATTCAACTCTGGGGTCTTATCAGGATAACAAAATTAAAACAATGGAACAGGAAGCTGGGATATTGGCACCCTTCAGTTCAAAGGAGCCTGGTAATCAGAGTACCAAAGCTATCTTGCAGGAAGAAAGATGCAATTATGTGACAGCAACACCTTTTACTACAGAAGTTGGTTGTCGCGGAGATCTCAATTCAAATGTGCCTGTATCAGAAAGTATGGGGAAACGGAAGGTCACAAATCTGTCAGAGTCAGCACTCTGTGACTCAACACGGCCTCCTGATGATTCTCAGGGTTCTTGTAAAAAGCTGAAAAGAATCTCCGATGATATTGTCAGGGACCTTAATTTGGATGCTTTGGGTGAAGAAAAACACCCAAGTACTTGTGCATCTTTGAAAAGTTTTGTTGAACATACTTCAAATAAATTAATAGTTTCTAGTAACACTTGCCATGGTGAGCATGACAAGGGTGTTGAGGATGGACAAAAGGATGTCACAAATGAGAGAGAATTTAAGCAGTTGTCCGATTCAATTGAAGGACAAGTTGATGAGATGGCATGTCTCTCAGAGTGGAAACCTCTGGAGAAAGATTTATATTCGAAGGGGGTAGAAATGTTTGGGAGAAACAGTTGCCTTATAGCCCGGAACTTACTTTTTGGCTTGAAGACTTGCATGCAAGTAGCTAACTACATGTATGCTGGTGGAGTGTCAATGCGCTGCAGATCCTTACCAAGTTCAATCATGGACAAAAATGGAAAAATTCATGCAGAGTTCACAGACCAAGGGATGCCATCAAGGTCACGGTTTCTGCGGAAAAGGAGCAAAACTAGGAAATTCAAATATTCTCGGAAGTCTGCTGGCCTCCCATCTATGTGGAGAAGAATTGCTCATGGGAAAAACCAATTTTACAAGCAGTATACACCTTGTGGATGTCAGGGAATGTGTGGAAAGCAATGTCCTTGTGTTCATAATGAAACTTGCTGTGAAAAATATTGTGGGTGTTCAAAGTCCTGCAAAAACCGGTTCAGAGGATGTCATTGTGCTAAGAGTCAATGCAGGAGTCGACAATGTCCATGCTTTGCAGCTGGACGTGAATGTGATCCGGATGTCTGTCGAAATTGTTGGGTTAGTTGCGGCGATGGTTCATTAGGGGAGCCACCTCGACGTGGAGATGGTCAATGTGGAAATATGAGGCTTCTTTTAAGGCAACAACAGAGGATTCTTTTGGCGAAGTCTGATGTTGCAGGATGGGGTGCCTTCTTAAAGAATCCAGTTAACAAAAATGATTACCTAGGAGAGTACACGGGTGAAATGATATCTCACAGAGAAGCAGAAAAGCGTGGGAAAATATATGATCGCGCCAACTTTTCTTTCCTTTTTGACTTGAATGATCAGTACGTTCTTGATGCGTATCGCAAAGGAGACAAATTGAAATTTGCGAACCATTCATCAAAACCCAACTGCTACGCAAAGGTCTTGTTGGTAGCTGGGGATCATCGAGTAGGCATATTTGCCAATGAGCACATTGAAGCAGGTGAGGAGCTTTTCTATGACTATCGCTATGGTCCAAATCATACACCACCATGGGTTCTTAAACTCAAGTCTGAGGGTCCCAAGAGAGACGAGTCAGCAGTTTCTCAGGGCAGAGCGAAGAAGCACCAGTCTCATTGA 2502 0.4189 MIPQERIKSNGKIVKHHVSIVLSAISRKAPLQTEENTNQMLSSRIDRPLCKFSGFSQGSGDKDHVNSRNILSETSIKIPYIERLPPYTFWIHLARNQRMAEDQSVVGRRRIYYDQHGSEALVCSDSDEELSVPKEVKHNFSEGEDRLLWMAFEEHGLTEEVLNIVRQFVGGTSSEIQERYKNLKEKNMRKWDQHSEDSGRCDSHIGICLEKSLSATLDSFDNLFCRRCIKIFDCPLHGCSQPLIYPSEKQLVWSEPEDDRKPCSDQCYLQLKDVNILSEDSTLGSYQDNKIKTMEQEAGILAPFSSKEPGNQSTKAILQEERCNYVTATPFTTEVGCRGDLNSNVPVSESMGKRKVTNLSESALCDSTRPPDDSQGSCKKLKRISDDIVRDLNLDALGEEKHPSTCASLKSFVEHTSNKLIVSSNTCHGEHDKGVEDGQKDVTNEREFKQLSDSIEGQVDEMACLSEWKPLEKDLYSKGVEMFGRNSCLIARNLLFGLKTCMQVANYMYAGGVSMRCRSLPSSIMDKNGKIHAEFTDQGMPSRSRFLRKRSKTRKFKYSRKSAGLPSMWRRIAHGKNQFYKQYTPCGCQGMCGKQCPCVHNETCCEKYCGCSKSCKNRFRGCHCAKSQCRSRQCPCFAAGRECDPDVCRNCWVSCGDGSLGEPPRRGDGQCGNMRLLLRQQQRILLAKSDVAGWGAFLKNPVNKNDYLGEYTGEMISHREAEKRGKIYDRANFSFLFDLNDQYVLDAYRKGDKLKFANHSSKPNCYAKVLLVAGDHRVGIFANEHIEAGEELFYDYRYGPNHTPPWVLKLKSEGPKRDESAVSQGRAKKHQSH 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5029g00018 833 MobiDBLite consensus disorder prediction 811 826 - -
Gabi5029g00018 833 ProSiteProfiles SET domain profile. 682 797 IPR001214 GO:0005515
Gabi5029g00018 833 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 5 832 IPR045318 GO:0006338|GO:0042054
Gabi5029g00018 833 SMART CXC_2 617 654 IPR033467 -
Gabi5029g00018 833 Pfam SET domain 693 796 IPR001214 GO:0005515
Gabi5029g00018 833 MobiDBLite consensus disorder prediction 811 833 - -
Gabi5029g00018 833 Pfam CXC domain 621 652 IPR041355 -
Gabi5029g00018 833 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 35 833 IPR025778 GO:0031519
Gabi5029g00018 833 SMART set_7 682 803 IPR001214 GO:0005515
Gabi5029g00018 833 CDD SET_EZH 682 798 - -
Gabi5029g00018 833 SMART sant 464 514 IPR001005 -
Gabi5029g00018 833 SMART sant 136 186 IPR001005 -
Gabi5029g00018 833 SUPERFAMILY SET domain 554 800 IPR046341 -
Gabi5029g00018 833 Gene3D SET domain 583 799 IPR046341 -
Gabi5029g00018 833 ProSiteProfiles CXC domain profile. 569 668 IPR026489 -
Gabi5029g00018 833 FunFam Putative histone-lysine N-methyltransferase EZH2 583 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5029g00018 Gabi-Chr5029 63931 75558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5029g00018 671 800 C2H2 Transcription Factor Family AT2G23740 27.211 1.12e-09 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi5029g00018 SET 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5029g00018 - - gmx:100808730 1187.94