Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5029g00004 ATGGCTCCAGAGCTTTTGCAGGCTGTGATGCAAAAGGATAACAGCTCTGATCTAGCTTTTGCTATTAATATTTGGAGTTTGGGTTGTATAATCATTGAAATGTTCACAGGGATGCCTCCTTGGAGCAAATATGTGACATGGTTGCTATTACAACTAAAGCATCCTTTTGGGCTGATCCCAGTTTTGATGTGTATCTCTTGGTGCAAAAGACATTGCTATGATGTCCCTTTTCAAAAGGAACCAGAGGAGATCCCTTGGACTGAGACTGGAGCTGAAATTATTGTTGAGTCCACTAGAGTTTTCACAGATAAGGAAAAGGCCGCTGCACATTTGAAGCTTATTGCTTAA 348 0.4109 MAPELLQAVMQKDNSSDLAFAINIWSLGCIIIEMFTGMPPWSKYVTWLLLQLKHPFGLIPVLMCISWCKRHCYDVPFQKEPEEIPWTETGAEIIVESTRVFTDKEKAAAHLKLIA 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5029g00004 115 ProSiteProfiles Protein kinase domain profile. 1 115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5029g00004 115 SUPERFAMILY Protein kinase-like (PK-like) 1 73 IPR011009 -
Gabi5029g00004 115 Gene3D Transferase(Phosphotransferase) domain 1 1 56 - -
Gabi5029g00004 115 Gene3D - 62 115 - -
Gabi5029g00004 115 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 85 - -
Gabi5029g00004 115 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 68 112 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5029g00004 Gabi-Chr5029 25659 29448 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5029g00004 1 44 MAP Kinase Kinase Kinase AT5G66850 77.273 1.53e-20 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gabi5029g00004 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5029g00004 - - thj:104821266 85.5001