Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5029g00001 ATGGACAGTAATGCCTCCCCCAAACTTGAGTCAGAAACATCTTCAGAGCTCAAAGCAGAAACTCAAGCATCCAAGAAAAGGAAAATGGTTGAGAAAACAGTTGTTGCAGTGAGGATAGGAGAGAATGTTAGCAAGTTGAAGAATGAAGGGCTACCTTCTGATTTTTGGTCATGGAGGAAATATGGACAAAAGCCAATCAAAGGGTCTCCATATCCAAGGGGCTATTACAAGTGCAGTACATCAAAGGGTTGTTCAGCTAAAAAGCAAGTAGAGAGATGCAGAACAGATGCTTCAATGCTCATCATTACCTATACCTCTAACCATAACCATCCAGGTCCTGCAGCACTCCCCACCTCAAATTCACCCCAACAACTAAAAGAATCAGAAACTGAAACCACCGAAGAATTCCCAGTTACCTCGAAAGAGGAAGACCAAGAACAGATAGAAGAACAAATGAATGATAAGTCCACTATGACCAGTGATCAAGTTACAAAAGAAGAAAACTTTCGTTACTTGCAATCTCCAATACGCTGCTCCGAAGAGATCATTATAGATCAAGAAGATCCTTTCAAACTAAACACGGAGAAAAGCCATGACAGAATAGATCTTCTCTTAGAGGAACAGCCCTTTTGTTATGCACAGCTCAAGAACTTCTCAGCATCTAAATCAGAAGAACTTGACTTTTTCGATGAGCTTGAGGAGCTACCCATGTCTTCATCTTTCTTACACTTTACTAGGAGCATTTTTTCCGATGAAAGGATTCCTGTTGCCCCTTCTTGA 780 0.4103 MDSNASPKLESETSSELKAETQASKKRKMVEKTVVAVRIGENVSKLKNEGLPSDFWSWRKYGQKPIKGSPYPRGYYKCSTSKGCSAKKQVERCRTDASMLIITYTSNHNHPGPAALPTSNSPQQLKESETETTEEFPVTSKEEDQEQIEEQMNDKSTMTSDQVTKEENFRYLQSPIRCSEEIIIDQEDPFKLNTEKSHDRIDLLLEEQPFCYAQLKNFSASKSEELDFFDELEELPMSSSFLHFTRSIFSDERIPVAPS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5029g00001 259 ProSiteProfiles WRKY domain profile. 47 113 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi5029g00001 259 FunFam WRKY transcription factor 65 32 113 - -
Gabi5029g00001 259 MobiDBLite consensus disorder prediction 13 29 - -
Gabi5029g00001 259 Pfam WRKY DNA -binding domain 54 111 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi5029g00001 259 Gene3D WRKY domain 38 114 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi5029g00001 259 SMART WRKY_cls 52 112 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi5029g00001 259 MobiDBLite consensus disorder prediction 1 29 - -
Gabi5029g00001 259 MobiDBLite consensus disorder prediction 108 145 - -
Gabi5029g00001 259 SUPERFAMILY WRKY DNA-binding domain 49 113 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi5029g00001 259 MobiDBLite consensus disorder prediction 128 145 - -
Gabi5029g00001 259 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 8 240 IPR044810 GO:0003700
Gabi5029g00001 259 MobiDBLite consensus disorder prediction 108 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5029g00001 Gabi-Chr5029 6277 7681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5029g00001 11 152 WRKY Transcription Factor Family AT4G01250 48.684 4.06e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi5029g00001 WRKY 3.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5029g00001 - - gmx:100127368 404.06