Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5024g00006 ATGATGATTACTGAACAAGAATCCAACACTAATTGTTCTTCTTTGACAGAAAGGGTTGACAAAGCATTGGACTTTTATGGTGCATTGTTCACTTGCTTGGAATCTACTGTTTCAAAAACAGAAGTAGAGAGAATCATACTGGAGAGGACTCTACTTGGGGAGGAAATAAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGTGAGGCATGAGAAACTTGAGACTTGGATCCCAAGGCTTGAATTGGCTGGTTTTGGGAGGGTACCTATCAGCTATGAAGGGATAACGCAGGCAAAAAAACAGTTGCACAGGTATGGAAATGGATATAAGCTTCATCAGGAGAAGAATTGCTTGTTTGCTTGCTGGAATGGTAAGCCACTCTTTTCTGTATCATCCTGGAAGCTTAGATGA 414 0.4082 MMITEQESNTNCSSLTERVDKALDFYGALFTCLESTVSKTEVERIILERTLLGEEIKNIVACEGVERKVRHEKLETWIPRLELAGFGRVPISYEGITQAKKQLHRYGNGYKLHQEKNCLFACWNGKPLFSVSSWKLR 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5024g00006 137 ProSiteProfiles GRAS family profile. 1 135 IPR005202 -
Gabi5024g00006 137 Pfam GRAS domain family 1 135 IPR005202 -
Gabi5024g00006 137 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 131 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5024g00006 Gabi-Chr5024 114079 114492 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5024g00006 1 137 GRAS Transcription Factor Family AT1G50420 50.725 9.78e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi5024g00006 GRAS 4.5e-41 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5024g00006 - - csin:114307341 188.348