Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5024g00004 ATGGACTCAGGTTCACCGTACCAGTGGCTGAGGGAGATGATATGGGATTCCCAAAGCTTAAATCCGATGAGTCTTCTAATTGAGTGTGCTAAATGTGTTGCATCAGGCAGCATCAAGAATGCAGATATTGGACTTGAATATATTTCTCAAATTTCATCTCCTGAAGGTGATGCAGCACAACGGATGGTCACCTATTTCAGTGAAGCACTTGGTTACAGGATAGTCAAACATTTACCTGGTGTATATAAAGCTCTCAATTCCTCAAAAACTTCATTGTCTTCTGAAGACATCCTTGTTCAGAAATACTTCTATGAATTGTGTCCCTTTTTGAAGTTTTCATACCTGATCGCGAATCAAGCGATTGTTGAAGCAATGGAATTTGAAAAGTTTGTTCATATTATTGATCTCCATTGTTCTGAGCCAGCTCAATGGATAAATCTTCTACTAACTTTAAAGAAACGTCAAGGAGGACCACCCAATTTGAAAATTACAGGCATTCATGAAAAGAAAGAGGTTTTGGACCAAATGAGGTTTCATTTAACAACTGAAGCTGGGAATTTGGATTTTCCTTTGCAGTTCTATCCAATTGTTAGCAAATTGGAAGATGTTGATTTTGAAAACTTGCCTGTCAAGACAGGAGATGCTCTTGCAATTACTTCTGTTCTTCAGCTGCATTCTCTTCTTGCAACTGATGATGAAGTTGTTGGGAAATTCTCACCAGCAGGAGCAGCATCAATGAATCTGCATAGAGCAGTGCACATGGGCCAAAGGACTTTCGCAGAATGGCTTGAGAGAGATATGATCAATGCTTATATCTTGAGTCCCGATTCTGCATTATCACCTCTTTCTTTTGGTGCTTCTCCTAAGATGGGGATCTTTCTTAATGCTATGCGAAAGCTTCAACCAAAACTATTTGTGATAACTGAACAAGAATCAAATCTAAATGGATCTAATTTGATGGAGAGATTTGACAGAGCAATGTACTTTTACAGTGCATTGTTTGATTGCTTGGAGTCTACTGTTATGAGAACATCAGCAGAGAGACAAAAACTTGAGAGCAAGCTTCTCGGAGAGCAGATAAAGAACATTATTGCTTGTGAGGGGGTTGACAGAAAGGAGAGGCATGAGAAACTTGAGAAATGGATTCAAAGGCTTGAAATGGCTGGGTTTGTGAAGGTACCTTTGAGCTACAATGGGAGAATAGAAGCAAAGAATCTGTTGCAGAGCTATGGTCATAAATACAAGTTTCGAGAAGAGAATGATTGCTTGCTTGTCTGCTGGAGTGATAGACCCCTCTTCTCTGTATCGGCATGGAATTTTAGGAGATGA 1329 0.3958 MDSGSPYQWLREMIWDSQSLNPMSLLIECAKCVASGSIKNADIGLEYISQISSPEGDAAQRMVTYFSEALGYRIVKHLPGVYKALNSSKTSLSSEDILVQKYFYELCPFLKFSYLIANQAIVEAMEFEKFVHIIDLHCSEPAQWINLLLTLKKRQGGPPNLKITGIHEKKEVLDQMRFHLTTEAGNLDFPLQFYPIVSKLEDVDFENLPVKTGDALAITSVLQLHSLLATDDEVVGKFSPAGAASMNLHRAVHMGQRTFAEWLERDMINAYILSPDSALSPLSFGASPKMGIFLNAMRKLQPKLFVITEQESNLNGSNLMERFDRAMYFYSALFDCLESTVMRTSAERQKLESKLLGEQIKNIIACEGVDRKERHEKLEKWIQRLEMAGFVKVPLSYNGRIEAKNLLQSYGHKYKFREENDCLLVCWSDRPLFSVSAWNFRR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5024g00004 442 ProSiteProfiles GRAS family profile. 13 439 IPR005202 -
Gabi5024g00004 442 Pfam GRAS domain family 24 438 IPR005202 -
Gabi5024g00004 442 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 20 435 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5024g00004 Gabi-Chr5024 99851 101990 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5024g00004 1 442 GRAS Transcription Factor Family AT1G50420 49.669 5.07e-151 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi5024g00004 GRAS 1.6e-118 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5024g00004 - - gmx:100779726 789.645