Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5023g00012 ATGAAAACGTTGGAGGATGGAGGTGGAAAAGGAGGAGCTAAAGTTAACACATGGGTTGATTCAATGAGAGCTTCATCTCCCACTCGAGTCAAATCTACCGTACCTAGTTCAGAAAATCAAGAACAAAGCCCTTGGATTCTTTACCATCCTTCGGCGCTTAGCATGTTTGATCAGATAATAAATTATTCGAAAGGGAAACAGATTGTGACCTTTCTTGACTATGATGGAACTCTCTCCCCAATTGTCGCAGATCCAGATAAAGCATTCATGAGTAAAAAGATGAGAGGGACATTAAGGGACGTAGCCAGGCATTTTCCCACAGCTATCGTGAGTGGAAGGTGCATAGACAAGGTATACAACTTTGTAAAATTGGAAGAACTGTACTATGCTGGAAGCCATGGCATGGACATCAAGGGACCAACAAATAGCCGTGGTACTAAGAAAGGTAATGATCAAGCAGTACTCTTCCAGCCTGCGAGTCAATTCCTGCCCATGATCAATGAGGTGTACAAGATCCTGGTGGAAAAAACAAAGTCTGTCCCTGGGGCTAAGGTAGAAAATAACAAGTTTTGCTTGTCCGTGCACTTTCGTTGTGTGGACGAAAAGAGTTGGGCACCACTAGCGGAGAAAGTTCGATTAGTACTTAAAGACTACCCAAAACTTAGGCTAACCCAAGGGAGAAAAGTGCTAGAGATTCGACCAACCATAAAATGGGACAAGGGCAAGGCTCTTGAATTCTTGTTAGAGTCACTTGGATATGCGAATTCTGCTAACGTATTTCCAATCTATATTGGTGATGATCGAACTGACGAGGATGCTTTTAAGGTTTTACGCAGTAGGGGCCAAGGGATTGGGATTCTTGTTTCTAAAATTCCAAAAGAAACAGATGCTTCATACACTTTGCAAGATCCATCAGAGGTGGGGCAATTTTTGCGGCGTTTGGTGGAGTGGAAAAGAACGACGCGCGGTAGGCCCAGCCAAAATAAAAAACTAACCAGCTAA 1002 0.4331 MKTLEDGGGKGGAKVNTWVDSMRASSPTRVKSTVPSSENQEQSPWILYHPSALSMFDQIINYSKGKQIVTFLDYDGTLSPIVADPDKAFMSKKMRGTLRDVARHFPTAIVSGRCIDKVYNFVKLEELYYAGSHGMDIKGPTNSRGTKKGNDQAVLFQPASQFLPMINEVYKILVEKTKSVPGAKVENNKFCLSVHFRCVDEKSWAPLAEKVRLVLKDYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGYANSANVFPIYIGDDRTDEDAFKVLRSRGQGIGILVSKIPKETDASYTLQDPSEVGQFLRRLVEWKRTTRGRPSQNKKLTS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5023g00012 333 FunFam Trehalose 6-phosphate phosphatase 68 154 - -
Gabi5023g00012 333 FunFam Trehalose 6-phosphate phosphatase 159 235 - -
Gabi5023g00012 333 CDD HAD_TPP 71 308 - -
Gabi5023g00012 333 SUPERFAMILY HAD-like 71 319 IPR036412 -
Gabi5023g00012 333 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 14 322 IPR044651 GO:0004805|GO:0005992
Gabi5023g00012 333 Gene3D - 68 155 IPR023214 -
Gabi5023g00012 333 Gene3D - 183 329 IPR023214 -
Gabi5023g00012 333 NCBIfam HAD-IIB family hydrolase 71 279 IPR006379 -
Gabi5023g00012 333 NCBIfam trehalose-phosphatase 66 315 IPR003337 GO:0003824|GO:0005992
Gabi5023g00012 333 Pfam Trehalose-phosphatase 71 305 IPR003337 GO:0003824|GO:0005992
Gabi5023g00012 333 FunFam Trehalose 6-phosphate phosphatase 165 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5023g00012 Gabi-Chr5023 124782 136111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5023g00012 62 314 Trehalose Biosynthesis Gene Families AT1G70290 26.766 8.11e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5023g00012 K01087 - gmx:100792915 546.199