Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi501g00005 ATGAAACCCCACTACAGCAACCAACGCCGCTCTCTCTTGCTTTTGCTCTTGTTCTTGTTCTCCTTCTCTCTCCACCCTTTACCATCTTCTTCTTCTTCTACCAGAGACCCCACCCAGCAACTGTTAAACTTCAAAGCCACTCTTCCGAACCCAACCCTGCTCCAGAACTGGCTTCCGAACCAAAATCCATGTTCATTCACCGGGATTACCTGCAACCAAACCTATCTCACTTCCATAGACCTCACCTCCATCCCACTCGGCACAAACCTCACCGTTATCTCAACCTACCTTCTCACCCTCGACCACCTTCAAGTCCTCACCCTCAAATCAACCAACCTCACCGGTTCCGGTGCCGTTGGCCACAGTTCCAAGAGTACCTCCTCATTAACAACCATAGATCTATCTCAGAACACCATTTCTGGGTCCTTTTCCGATTTGTCCTTCCTGGCCTCATGCTCCAACCTCCAATCTCTTAACCTCTCCAACAACCTTCTCGAATTCGATTCTCCACCTCGCTGGAAGCTTGGCCTCAATATTCAAGTCCTTGACCTCTCTTACAACAAGATTTCCGGTCCCAACTTTCTCCCTTGGATCCTCAACGTCACACCTGGGTTGAACTACTTGGCTCTCAAAGGGAACAAAATCACCGGCGAAACCGACTTCTCCGGCTTCACCACTTTGCAGCATTTGGACCTTTCCTCCAACAACTTCTCCGTCGCCATTCCTTCCCTCGGCGAGTGTTCTTCCCTCGAGTATCTCGACCTCTCTGCCAACAAGTACTTCGGCGACATTGCTCGCACTCTATCACCTTGCAAGAACCTCATCTACCTCAACGCTTCCAACAACCAGTTCTCCGGTACGGTTCCGTCTCTCCCCTCCGGTTCCCTGCAGTTCCTCTACCTCGCCGGAAACCACTTCCAAGGCCAGATTCCGGTGACCCTCGCCGATCTCTGCTCCACTCTTGTCGAACTCGACCTATCCTCCAACAACCTCACCGGCTACCTCCCCGGCCAGTTCGGCGCGTGTTCCTCGCTTCAATCATTAGACATATCGAGCAACCGGTTCGCCGGGTCGTTGCCGATTGATGTGTTGACGGAGATGAGTAACCTGAGAGAGCTCGCCTTGTCGTTCAACGAGTTCGTTGGGGTTGTACCGGACTTGCTTTCGCAGCTTTCAAGTTTGGAGTTGTTGGATCTGAGTTCTAACAACTTGAGCGGTTCAATCCCTATGTCGCTGTGTGAAAATGGTGGGAACAATTTGCAGGAACTGTACCTGCAGAATAACCGTTTAACCGGTTATATTCCACCCACGCTCAGCAACTGTTCCAACCTCGTTGCCTTGGACTTAAGTTTCAACTTCCTGACGGGTACTATCCCTGCAAGTTTAGGGTCCCTTTCGAAGCTTCGTGATTTGATCATCTGGTTGAACCAGCTACACGGGGAGATACCCCAAGAGCTTATGTACATCAAGACCCTTGAGAACTTGATCCTTGACTTCAACGACTTAACTGGGAACATTCCTTCTGGGCTAGTCAACTGCACCAACATGAATTGGATCTCCCTTTCCAACAACAGGCTCAGCGGCCAGATTCCGGCGTGGATTGGGCAGCTTTCAAATCTGGCTATCCTCAAGCTCAGCAATAACTCGTTCTCCGGCGGAATCCCGCCGGAGCTCGGGGATTGCCATAGCTTGATATGGTTGGATCTGAATACTAATTTGCTCACCGGGCCAATCCCTCCCGAGTTGTTTAAACAATCCGGGAAGATTGCGGTTAATTTCATTAGTGGGAAGACTTATGTATACATCAAGAATGATGGTAGTAAGGAGTGTCATGGTGCTGGGAACTTGCTCGAGTTCGCCGGGATTAGTCAGCAGCAGTTGAGCAGGATTTCGACCCGGAACCCTTGCAATTTCACTAGAGTTTATGGAGGTAAGCTGCAGCCAACGTTTAACCATAATGGTTCTATGATCTTTTTGGATATTTCACACAACATGTTGTCTGGGAGTATTCCCAAGGAAATTGGGGTAATGTACTATTTGTATATCTTGAATTTGGGTCATAATAATATATCTGGAAACATTCCACAAGAGCTTGGGAAGATGATCAATCTCAACATACTTGATCTCTCCTACAATAGGCTCCAAGGCCAAATTCCACAAACATTGACGGGGCTTTCATTGCTCACTGAGATTGACTTGTCAAACAACTACCTGACCGGGATGATTCCGGAGTCCGGTCAATTTGATACTTTTCCAGCTGGCAGGTTCCAGAATAACTCTGGTCTCTGTGGAGTTCCTCTGTTGAACTCGTGTGGGACACAGTCAGGAGCTAGTGCAAATGCCATAAATCAGAAGTCTCATAGGAGACAGGCATCTCTTGCGTGGAGTGTGGCTATGGGATTGCTACTTTCGCTCTTCTGTGTCTTTTGTTTGATTATAACTGCCATTGAGACGAGAAAGAGGAGGAAGAAGAAGGAAGCTTCCCTTGATATCTACATTGATGGTAATTCTCATTCCGGAACAGCCAATGCCAGCTGGAAATTGACCAGTGCCCGTGAAGCACTTAGCATAAACCTTGCAACATTTGAGAAGCCTCTAAGGAAGCTCACTTTTGCAGATCTTCTTGAAGCTACCAATGGCTTCCACAATGACAGTCTTATTGGTTCCGGCGGTTTTGGCGACGTGTACAAGGCTCAGTTGAAGGATGGAAGTGTTGTGGCCATCAAGAAACTCATACATGTCAGCGGACAAGGGGACAGGGAATTCACTGCTGAAATGGAAACAATTGGGAAAATCAAGCACAGGAACCTTGTTCCCCTTCTGGGCTATTGCAAGGTTGGAGAAGAAAGGCTCTTGGTTTATGAATACATGAAATACGGGAGCCTAGAAGATGTTCTGCATGACCAGAAGAAAGCAGGGATAAAGCTGAACTGGGCAGTGAGGAGGAAAATTGCCATTGGTGCTGCAAGGGGATTGGCTTTCCTTCACCACAATTGTATCCCGCACATCATTCATAGAGACATGAAGTCAAGCAATGTATTGCTTGATGAGAACCTAGAAGCCAGAGTCTCTGATTTTGGAATGGCTAGGCTTATGAGTGCTATGGATACCCATTTAAGTGTCAGCACACTAGCAGGCACCCCTGGCTATGTTCCTCCCGAATACTATCAAAGCTTCAGATGCTCCACTAAAGGTGATGTTTATAGTTATGGTGTTGTTTTGCTGGAGCTGCTAACAGGGAAAAGGCCAACGGACTCGGCTGATTTTGGTGATAACAATCTTGTGGGATGGGTTAAACAACATGCCAAACTGAAAATAAGTGATGTTTTTGACCCTGAGCTCATGAAAGAAGACCCCACTCTGGAGATTGAGCTTTTACAGCATTTAAAGGTGGCTTGTGCTTGTTTGGATGATCGACATTGGCGGCGTCCTACCATGATTCAAGTCATGGCAATGTTCAAGGAAATCCAGGCGGGGTCCGGCATGGATTCTCAGTCTACCATAGCCACCGAGGATGAAGGTTTCAATGCAGTTGAAATGGTAGAGATGAGCATTAAAGAAGCCCCTGAATTAAGCAAGAATTAG 3585 0.4767 MKPHYSNQRRSLLLLLLFLFSFSLHPLPSSSSSTRDPTQQLLNFKATLPNPTLLQNWLPNQNPCSFTGITCNQTYLTSIDLTSIPLGTNLTVISTYLLTLDHLQVLTLKSTNLTGSGAVGHSSKSTSSLTTIDLSQNTISGSFSDLSFLASCSNLQSLNLSNNLLEFDSPPRWKLGLNIQVLDLSYNKISGPNFLPWILNVTPGLNYLALKGNKITGETDFSGFTTLQHLDLSSNNFSVAIPSLGECSSLEYLDLSANKYFGDIARTLSPCKNLIYLNASNNQFSGTVPSLPSGSLQFLYLAGNHFQGQIPVTLADLCSTLVELDLSSNNLTGYLPGQFGACSSLQSLDISSNRFAGSLPIDVLTEMSNLRELALSFNEFVGVVPDLLSQLSSLELLDLSSNNLSGSIPMSLCENGGNNLQELYLQNNRLTGYIPPTLSNCSNLVALDLSFNFLTGTIPASLGSLSKLRDLIIWLNQLHGEIPQELMYIKTLENLILDFNDLTGNIPSGLVNCTNMNWISLSNNRLSGQIPAWIGQLSNLAILKLSNNSFSGGIPPELGDCHSLIWLDLNTNLLTGPIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLSRISTRNPCNFTRVYGGKLQPTFNHNGSMIFLDISHNMLSGSIPKEIGVMYYLYILNLGHNNISGNIPQELGKMINLNILDLSYNRLQGQIPQTLTGLSLLTEIDLSNNYLTGMIPESGQFDTFPAGRFQNNSGLCGVPLLNSCGTQSGASANAINQKSHRRQASLAWSVAMGLLLSLFCVFCLIITAIETRKRRKKKEASLDIYIDGNSHSGTANASWKLTSAREALSINLATFEKPLRKLTFADLLEATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKAGIKLNWAVRRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSADFGDNNLVGWVKQHAKLKISDVFDPELMKEDPTLEIELLQHLKVACACLDDRHWRRPTMIQVMAMFKEIQAGSGMDSQSTIATEDEGFNAVEMVEMSIKEAPELSKN 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi501g00005 1194 Pfam Leucine rich repeat 344 404 IPR001611 GO:0005515
Gabi501g00005 1194 Pfam Leucine rich repeat 419 476 IPR001611 GO:0005515
Gabi501g00005 1194 Pfam Leucine rich repeat 680 738 IPR001611 GO:0005515
Gabi501g00005 1194 FunFam serine/threonine-protein kinase BRI1-like 2 842 956 - -
Gabi501g00005 1194 PRINTS Leucine-rich repeat signature 321 334 - -
Gabi501g00005 1194 PRINTS Leucine-rich repeat signature 391 404 - -
Gabi501g00005 1194 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
Gabi501g00005 1194 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 195 415 - -
Gabi501g00005 1194 SMART serkin_6 881 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi501g00005 1194 ProSitePatterns Protein kinases ATP-binding region signature. 887 910 IPR017441 GO:0005524
Gabi501g00005 1194 SMART LRR_typ_2 701 724 IPR003591 -
Gabi501g00005 1194 SMART LRR_typ_2 391 415 IPR003591 -
Gabi501g00005 1194 SMART LRR_typ_2 224 247 IPR003591 -
Gabi501g00005 1194 SMART LRR_typ_2 317 341 IPR003591 -
Gabi501g00005 1194 SMART LRR_typ_2 367 390 IPR003591 -
Gabi501g00005 1194 SMART LRR_typ_2 725 748 IPR003591 -
Gabi501g00005 1194 SMART LRR_typ_2 419 441 IPR003591 -
Gabi501g00005 1194 SMART LRR_typ_2 537 561 IPR003591 -
Gabi501g00005 1194 Gene3D Ribonuclease Inhibitor 41 768 IPR032675 -
Gabi501g00005 1194 Pfam Brassinosteroid receptor island domain 587 651 IPR045381 -
Gabi501g00005 1194 SUPERFAMILY RNI-like 265 580 - -
Gabi501g00005 1194 SUPERFAMILY L domain-like 53 357 - -
Gabi501g00005 1194 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 416 591 - -
Gabi501g00005 1194 ProSiteProfiles Leucine-rich repeat profile. 226 248 IPR001611 GO:0005515
Gabi501g00005 1194 Pfam Leucine Rich repeats (2 copies) 225 264 IPR025875 -
Gabi501g00005 1194 FunFam Brassinosteroid LRR receptor kinase 957 1158 - -
Gabi501g00005 1194 SUPERFAMILY L domain-like 648 766 - -
Gabi501g00005 1194 Pfam Protein kinase domain 881 1150 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi501g00005 1194 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 295 1152 - -
Gabi501g00005 1194 Gene3D Phosphorylase Kinase; domain 1 841 956 - -
Gabi501g00005 1194 CDD STKc_IRAK 887 1156 - -
Gabi501g00005 1194 ProSiteProfiles Protein kinase domain profile. 881 1156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi501g00005 1194 FunFam Serine/threonine-protein kinase BRI1-like 1 594 651 - -
Gabi501g00005 1194 Pfam Leucine Rich repeat 318 333 IPR001611 GO:0005515
Gabi501g00005 1194 Pfam Leucine rich repeat N-terminal domain 39 72 IPR013210 -
Gabi501g00005 1194 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1003 1015 IPR008271 GO:0004672|GO:0006468
Gabi501g00005 1194 Gene3D Transferase(Phosphotransferase) domain 1 957 1158 - -
Gabi501g00005 1194 Gene3D - 592 652 - -
Gabi501g00005 1194 SUPERFAMILY Protein kinase-like (PK-like) 867 1159 IPR011009 -
Gabi501g00005 1194 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 648 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi501g00005 Gabi-Chr501 82760 86860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi501g00005 29 1190 Receptor kinase-like Gene Family AT4G39400 68.857 0.0 1535
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Gabi501g00005 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi501g00005 K13415 - gmx:100499629 1921.75