LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi501g00003	ATGTCAACAACGTCCCAAACTATTGTTAACCACAGTTTGTTTGAAGATCAAGATCAGATCCCTACGCAGATGGGGTTCATTCCTTTCTCAGCAAATCTTACCTTCCCTTCTTTGGGTTGCCATCCATCTTTGAAATCCATCAGTGTAATAGCTCCTTCACTTTCTTCTGAAGCCGCTAATTCTACTGCAAATTTTGCAGAAACCCTACTTGCAACCTCTGTTCAAAAACCACAAGATCTCACTTCTATTTTTGGAGGAGGATCGAGGGTAAATTCAGGGGCATGGGGAGAAGTAACAGATTACTTGATTGGTAAAAGAAGTGGAGGAGATGATCAATATCTAGGGGTTTCTGCCATGAAGATGAAGAAGATCAAGGCAAGAAGGAAGGTGAGGGAACCAAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGGCAGAAAGTGGTAAAGAACACACAACACCCAAGAAGCTACTACCGTTGCACCCAAGATAATTGTCGAGTAAAGAAACGCGTGGAGCGCTTAGCTGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGTGCACTCTCCATCAAATGAACTTGAAGACTCGCAAACTTCATCTGAACTTAGCAATTTCTTGTGGTAG	672	0.433	MSTTSQTIVNHSLFEDQDQIPTQMGFIPFSANLTFPSLGCHPSLKSISVIAPSLSSEAANSTANFAETLLATSVQKPQDLTSIFGGGSRVNSGAWGEVTDYLIGKRSGGDDQYLGVSAMKMKKIKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHSPSNELEDSQTSSELSNFLW	223

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi501g00003	223	MobiDBLite	consensus disorder prediction	208	223	-	-
	Gabi501g00003	223	SMART	WRKY_cls	146	205	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi501g00003	223	Gene3D	WRKY domain	133	199	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gabi501g00003	223	MobiDBLite	consensus disorder prediction	202	223	-	-
	Gabi501g00003	223	FunFam	WRKY transcription factor 57	132	206	-	-
	Gabi501g00003	223	ProSiteProfiles	WRKY domain profile.	141	206	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi501g00003	223	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	91	208	IPR044810	GO:0003700
	Gabi501g00003	223	Pfam	WRKY DNA -binding domain	147	203	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gabi501g00003	223	SUPERFAMILY	WRKY DNA-binding domain	138	205	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi501g00003	Gabi-Chr501	17628	21071	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi501g00003	116	223	WRKY Transcription Factor Family	AT4G39410	79.646	4.55e-64	199

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gabi501g00003		WRKY	9.2e-25	CL0274