Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5016g00017 ATGGCGAGGCGGAAGATCAAGATCAAGAAAATTGACAATGTAACGGCGAGGCAAGTGACCTTCTCTAAGAGGAGACGAGGGATCTTCAAGAAAGCTGAAGAGCTTTCTGTGCTGTGCGATGCTGAGGTTGGTCTTGTCATTTTCTCAGCTACTGGGAAGCTCTTTGAATATCCTAGCTCAAGTATGAAGGACATAATTACGAGGTATAATCGGCACTTCCATGACAACAACGAATTGGACAGTCCTCTAGAACTGCAGGTAGAGAATACTAGCAACAACATTGAATTGAGTAAGGAAACTGCTGATAAAGCCCAGCAACTAAGGCGGATGAAAGGTGAGGATTTTCAAGGGCTAAACTTGGATGACTTGCAACAACTGGAGAGAACACTTGTAACAGGACTCAAGCGCGTGATTGAGACAAAGGAAAATCGGATTATGGACGAGATTGTTGCATTTCAGAATAAGGGAATCAAGTTAGAAGATGAGAACAAGCAGTTAAAGCAAAAGATGGCTATGCTGTGTAAGGAAAAAAGTTCTTTCCTGGTGGAGTCAGATATTGCCATGAAGGAAGTTGTCTCATCAGAATCTATGAATAATGTCTGCAGCTGCAACAGTGGCCCCTCTCTTGAGGATGATTCCTCTGACACATCTCTTAAGTTAGGGTTGCCCTTTCCTAATTAA 681 0.4288 MARRKIKIKKIDNVTARQVTFSKRRRGIFKKAEELSVLCDAEVGLVIFSATGKLFEYPSSSMKDIITRYNRHFHDNNELDSPLELQVENTSNNIELSKETADKAQQLRRMKGEDFQGLNLDDLQQLERTLVTGLKRVIETKENRIMDEIVAFQNKGIKLEDENKQLKQKMAMLCKEKSSFLVESDIAMKEVVSSESMNNVCSCNSGPSLEDDSSDTSLKLGLPFPN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5016g00017 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Gabi5016g00017 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi5016g00017 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi5016g00017 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi5016g00017 226 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi5016g00017 226 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Gabi5016g00017 226 MobiDBLite consensus disorder prediction 205 226 - -
Gabi5016g00017 226 Pfam K-box region 93 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi5016g00017 226 Coils Coil 87 107 - -
Gabi5016g00017 226 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gabi5016g00017 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi5016g00017 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi5016g00017 226 FunFam Transcription factor, MADS-box 13 83 - -
Gabi5016g00017 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi5016g00017 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi5016g00017 226 Coils Coil 149 176 - -
Gabi5016g00017 226 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5016g00017 Gabi-Chr5016 125341 131440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5016g00017 1 224 MADS-box Gene Family AT2G22540 52.301 3.86e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi5016g00017 K-box 1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5016g00017 - - vvo:131620668 318.161