Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5016g00014 ATGCTTCCTTTTCGGAGATTCTATGGGTTCGAGAGCTGGCTGGATCACGAGAGCTCGTTGATCAAGGCAACGGAATTGGACGGTGGAAGATCAAAGACGGAGAGGAAATCAACGGAAGCATGCAAGAGTCATAGGGAAGCTGAGAGGAGACGCAGGCAGCGAATCAACGCCCACCTCTCCACTCTACGCTCTCTTCTCCCTAATTCCGCTAAGTCGGATAAGGCGTCGTTGCTGGCGGAAGTGGTTCAACACGTGAAACGGCTGAGGATTCAGGCCGATGACGTGGCGCGATGTCACGAGGGAGATTCGTCGTCATCCTGCAGCAGCGGCGGCGGCGGCGGCGGCGGGAGAGAAAGCGATTCGGTTCGTTCTGTGGCGGATGCCGAGCCTTGGCCGTTTCCCGGGGAGTCTGATGAGGCGACGCTGAGCTATTGCGACGGTGATGATGGGGAACCGAGGCGGATGAAAGCGACGGTGTGCTGCGAGGACCGGCCCGGTCTGAACCGGGACCTAACTCAGGCAATCCGGTCGGTTCGGGCCAAGGCGGTTCGCGCGGAGATGATGACGGTTGGGGGCCGAACCAAGAGTGTTGTGGTGATACAGTGGCCTGATGGTGGTGGTGGTAATGCAAGAAAGGAAGAAGAAGTTGGAGCGCTGGAACGGGCTTTGAAGGCTGTCATAGATAATCGGGCTTTGGTGGGCTCTGGGATGGGCCCAGTGGTTTTGGGCCAGAAACGGGCTCGGGACAGTTATGATTCGCCTACTAGTGAGGTTGACTGTGCCTTCGTGTCGAGGAATGTCGACTAA 807 0.5774 MLPFRRFYGFESWLDHESSLIKATELDGGRSKTERKSTEACKSHREAERRRRQRINAHLSTLRSLLPNSAKSDKASLLAEVVQHVKRLRIQADDVARCHEGDSSSSCSSGGGGGGGRESDSVRSVADAEPWPFPGESDEATLSYCDGDDGEPRRMKATVCCEDRPGLNRDLTQAIRSVRAKAVRAEMMTVGGRTKSVVVIQWPDGGGGNARKEEEVGALERALKAVIDNRALVGSGMGPVVLGQKRARDSYDSPTSEVDCAFVSRNVD 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5016g00014 268 PANTHER TRANSCRIPTION FACTOR BHLH30 29 248 IPR045847 GO:0003700|GO:0006355
Gabi5016g00014 268 SMART finulus 45 94 IPR011598 GO:0046983
Gabi5016g00014 268 SUPERFAMILY ACT-like 157 228 IPR045865 -
Gabi5016g00014 268 MobiDBLite consensus disorder prediction 99 141 - -
Gabi5016g00014 268 Pfam Helix-loop-helix DNA-binding domain 41 88 IPR011598 GO:0046983
Gabi5016g00014 268 MobiDBLite consensus disorder prediction 25 50 - -
Gabi5016g00014 268 Gene3D - 153 232 - -
Gabi5016g00014 268 Gene3D - 33 99 IPR036638 GO:0046983
Gabi5016g00014 268 CDD ACT_UUR-ACR-like 158 227 - -
Gabi5016g00014 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 96 IPR036638 GO:0046983
Gabi5016g00014 268 Coils Coil 209 229 - -
Gabi5016g00014 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5016g00014 Gabi-Chr5016 88781 90203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5016g00014 36 228 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.000 7.72e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi5016g00014 HLH 7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5016g00014 - - gmx:100816394 340.887