Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5016g00009 ATGTTCTCAAAGCTTCACCAACACCAGCAGCAGCAGCAGCAGCACCAACAACAACAACAACAGCACCCTTTCCAACTCTCCCGGGATTGCCAAACCTCCGAGGATGACGACAGCCGCAGCAGCGGTGGCCTCACCCCCTCCACCGCCCAGAACCTCTGCGGCGGCGGAGGTGGTGACGAAGCCACCATTGAGGTCGTGCGCCGGCCCAGGGGCCGCCCACCTGGGTCCAAAAACAAGCCCAAACCGTCATTAATTATAACTCGCGAGCCCGAGCCCGCTATGAGCCCATACATTCTTGAAGTCCCTGGAGGAAGCGACGTCGTTGAGTCCATAGCCCGGTTCAGCCGCCGCAACAACACGGGCCTCTGCGTCCTAACCGGTTCAGGAACCGTCGCTAACGTCACCCTCCGTCAACCCTCCACCACTCCCGGCGCCATCGTCACCTTCCACGGCCGCTTCGACATCCTCTCCCTATCCGCCACCTTCCTCCTCCACAACCAACCGGGAGCCTCGCCGGCGGTCCCGAACAACTTCTCCATCTCCCTCGCCGGACCTCAGGGGCAGATCTTCGGAGGAATCGTCGCAGGCCGTTTGCTCGCCGCGGGGACGGTTTTCGTGACATCCGCTTCGTTCAACAACCCATCGTATCACAGGCTGCCATCGGAAGAGGACGTGCAAAACAACTCTGTCTCCGGCGGTGGCGATGTGAAATCGCCACTGGTATCCGGTGGCGGTGCGGAGAGTGGTCATGTCCATGCTGAGTCGTTGTATCAGAGAGCCCATGGGCCTGCTTGGAGCTTCGTTGGATGA 810 0.6086 MFSKLHQHQQQQQQHQQQQQQHPFQLSRDCQTSEDDDSRSSGGLTPSTAQNLCGGGGGDEATIEVVRRPRGRPPGSKNKPKPSLIITREPEPAMSPYILEVPGGSDVVESIARFSRRNNTGLCVLTGSGTVANVTLRQPSTTPGAIVTFHGRFDILSLSATFLLHNQPGASPAVPNNFSISLAGPQGQIFGGIVAGRLLAAGTVFVTSASFNNPSYHRLPSEEDVQNNSVSGGGDVKSPLVSGGGAESGHVHAESLYQRAHGPAWSFVG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5016g00009 269 MobiDBLite consensus disorder prediction 37 52 - -
Gabi5016g00009 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 233 IPR014476 GO:0003680
Gabi5016g00009 269 MobiDBLite consensus disorder prediction 216 235 - -
Gabi5016g00009 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 96 213 IPR005175 -
Gabi5016g00009 269 CDD DUF296 96 208 IPR005175 -
Gabi5016g00009 269 FunFam AT-hook motif nuclear-localized protein 95 230 - -
Gabi5016g00009 269 PIRSF ESCAROLA 1 266 IPR014476 GO:0003680
Gabi5016g00009 269 ProSiteProfiles PPC domain profile profile. 91 232 IPR005175 -
Gabi5016g00009 269 MobiDBLite consensus disorder prediction 1 28 - -
Gabi5016g00009 269 MobiDBLite consensus disorder prediction 1 89 - -
Gabi5016g00009 269 Gene3D - 95 231 - -
Gabi5016g00009 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 93 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5016g00009 Gabi-Chr5016 56365 58732 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5016g00009 59 251 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 63.590 9.81e-82 245
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5016g00009 - - gmx:100811053 338.191