Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5016g00001 ATGAGGATGAAAAGGAAAGGAAGTGAGTGTGACGAGTCCTCGAAATTGACTGACATTTTGAGATCCAATCATGGGTCTCCGTCGTCCAATTTTGAGACCCATTATTCGATGGAAGATTGTTCGAGGTTGAAGAAGAGGTGTAGAGAAAATACTAAGATAGACTCAGCTGGTTCCTACAAGAGTAGGGTGGCGGGTTTTGCCACTGCTCCTCCTTGTGGGACATTGTCTCTGATGACCGCGGGAAGAGGCCTAAAGAGGAAGATAGGTTGCATTGACGTGGCTACCCAGATGGGGAGGAAGAACAAGATTGAAGATGATTATGTTACTGGGGTGACGATCGGGCAAGGAAAGTATGGATCTGTTTCGTTGTGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTGTGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGATTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGACATCCATGGATATCTTTCTACACAGAACGTACATTGAAGATCCTGCCCGTTGAATCAAAGTTGAAGCACCAAAATGGAGCTGCTTGCCACAACTTTGTTGCTGCACCTGAACCTAGGTTAGGAAGAAACAGGATGGATGATGGGTTCCTTAATGAGGTTTCAAGCCTTTCTTCATCATCTGAAAGTTGCAATTCAGAATATCATGATGTTTGTGTGTGGATTGATGCACTTGCCAATGCAATTTCACATGTAAGGATATCTGAACCAAAGAGGAGCAAGTTGTGGGCAGTTCCAATTCATCAGCAAGGTTTATCTAACATGAGGGCTAACCTCTGTAAAGCATTTTGA 1401 0.4547 MRMKRKGSECDESSKLTDILRSNHGSPSSNFETHYSMEDCSRLKKRCRENTKIDSAGSYKSRVAGFATAPPCGTLSLMTAGRGLKRKIGCIDVATQMGRKNKIEDDYVTGVTIGQGKYGSVSLCRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLDFQTGMWESISKPARDLVGRMLTRDISARITADEVLRHPWISFYTERTLKILPVESKLKHQNGAACHNFVAAPEPRLGRNRMDDGFLNEVSSLSSSSESCNSEYHDVCVWIDALANAISHVRISEPKRSKLWAVPIHQQGLSNMRANLCKAF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5016g00001 466 PANTHER SERINE/THREONINE-PROTEIN KINASE 94 381 - -
Gabi5016g00001 466 MobiDBLite consensus disorder prediction 1 18 - -
Gabi5016g00001 466 CDD STKc_CAMK 106 354 - -
Gabi5016g00001 466 FunFam Maternal embryonic leucine zipper kinase 98 376 - -
Gabi5016g00001 466 MobiDBLite consensus disorder prediction 1 31 - -
Gabi5016g00001 466 ProSitePatterns Protein kinases ATP-binding region signature. 113 136 IPR017441 GO:0005524
Gabi5016g00001 466 ProSiteProfiles Protein kinase domain profile. 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5016g00001 466 SUPERFAMILY Protein kinase-like (PK-like) 101 391 IPR011009 -
Gabi5016g00001 466 SMART serkin_6 107 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5016g00001 466 Pfam Protein kinase domain 108 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5016g00001 466 Gene3D Transferase(Phosphotransferase) domain 1 98 391 - -
Gabi5016g00001 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5016g00001 Gabi-Chr5016 549 2865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5016g00001 97 355 EF-hand Containing Proteins AT4G35310 44.444 1.42e-77 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi5016g00001 Pkinase 2.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5016g00001 - - gmx:100812729 692.575