Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5011g00008 ATGGGGGGAGGATCTTCAACTGAGGAGAATTTAGGTACACGCTGGCGGGAATGCACCCAAATCCTTAAAAGCCGCCTGCATTCTGTCATTCTTCCAATTGGAAGCCTACCCGTTGGCCTTTGTGTCCACCGAGCATTGCTCTTTAAAGTGTTAGCTGACTTAATCAATCTACCATGCCGAATTGCTAAGGGCTGCAAGTATTGTAGGATGGACCGGGGTGCTTCTTGTATAGTGCAATTTGGTCCTGACAGGGAGTATATGGTTGATTTGGTTGGAAGGCCTGGGGCAACGTGCCAACCTGATTCTGCTCTAAATTCTGCATCTTCAATGTTGATCCCTTCACCGTTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCTGAATTTACAAAGACATTAGCCCAATTGTATTTCATGGACAGTCAAGCACTGCATCTTGTATTTGATACGACGTCAGGAGGTGCTGTTAATTGTAGTGATGGAATAGATCTACTGCGAATTGAAGCTTTTGGTGCAAACTATACTGGTGGAAACAGCCATCTGGCTGATTTGAGTCCTGGTAGAGAGGAATACGTGTCTTACAAAGACGCAAACCAGTCGGTCATGAATTATCCAAGTCATGAAGTTGACCTTCACAAGGAGGAACTGGACATTCCATTGGGTGAACTTATTTTGAAGGAGAACATTGGTACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGTTCCGATGTTGCTGTGAAGATTCTCAAGGTGCAAGGTTTTGATGCAGAACAATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTGCGGCATCCAAATATTGTACTTTTAATGGGTGCAGTTTTTCAACCCCCAAATTTATCAATAGTAACAGAGTATTTATCAAGAGGTAGCTTGTATGAACTTCTGCATATACCCGGTGTTGGATTATCACTCAGTGAGAGGCGTCGTTTGAGAATGGCTTATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATTTGTTAGTTGATGATTCATACACAGTTAAGGTAGGTGACTTTGGTCTTTCACGTACAAAGGCAAATACATTTCTTTCATCTAAAACAGCAGCCGGAACTCCTGAATGGATGGCACCAGAAGTCATTCGAGGTGAATCATCAAATGAAAAATGTGATGTGTTCAGCTTTGGTGTAATCTTGTGGGAATTAGTGACCCTGCAACAGCCATGGAAACAATTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGACAAAAGGCTAGAGATTCCAAGCCAGGTGAATCCTCAAGTAGCTGCCTTGATTGAGCTCTGCTGGGCTACTGAACCCTGGAGACGGCCTTCTTTCTCCTATGTTATGAAATGTTTGCAGCAAATAATTGCCGATTCCAAAAGGAATTGCATCGGGATCGATAGTTTTCATGCTTTGAACCTTCTCTAG 1503 0.4311 MGGGSSTEENLGTRWRECTQILKSRLHSVILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRMDRGASCIVQFGPDREYMVDLVGRPGATCQPDSALNSASSMLIPSPLCHPKFKPVETAEFTKTLAQLYFMDSQALHLVFDTTSGGAVNCSDGIDLLRIEAFGANYTGGNSHLADLSPGREEYVSYKDANQSVMNYPSHEVDLHKEELDIPLGELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDAEQFEEFLKEVSLMKRLRHPNIVLLMGAVFQPPNLSIVTEYLSRGSLYELLHIPGVGLSLSERRRLRMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVGDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGESSNEKCDVFSFGVILWELVTLQQPWKQLNPSQVVAAVGFMDKRLEIPSQVNPQVAALIELCWATEPWRRPSFSYVMKCLQQIIADSKRNCIGIDSFHALNLL 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5011g00008 500 ProSiteProfiles Protein kinase domain profile. 223 481 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5011g00008 500 Gene3D Phosphorylase Kinase; domain 1 216 301 - -
Gabi5011g00008 500 SMART serkin_6 223 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5011g00008 500 ProSitePatterns Protein kinases ATP-binding region signature. 229 250 IPR017441 GO:0005524
Gabi5011g00008 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Gabi5011g00008 500 FunFam Serine/threonine-protein kinase CTR1 302 487 - -
Gabi5011g00008 500 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 44 482 - -
Gabi5011g00008 500 FunFam Serine/threonine-protein kinase isoform 1 213 301 - -
Gabi5011g00008 500 SUPERFAMILY Protein kinase-like (PK-like) 197 477 IPR011009 -
Gabi5011g00008 500 CDD STKc_MAP3K-like 229 475 - -
Gabi5011g00008 500 Pfam Protein tyrosine and serine/threonine kinase 224 477 IPR001245 GO:0004672|GO:0006468
Gabi5011g00008 500 PRINTS Tyrosine kinase catalytic domain signature 297 310 IPR001245 GO:0004672|GO:0006468
Gabi5011g00008 500 PRINTS Tyrosine kinase catalytic domain signature 404 426 IPR001245 GO:0004672|GO:0006468
Gabi5011g00008 500 PRINTS Tyrosine kinase catalytic domain signature 385 395 IPR001245 GO:0004672|GO:0006468
Gabi5011g00008 500 PRINTS Tyrosine kinase catalytic domain signature 448 470 IPR001245 GO:0004672|GO:0006468
Gabi5011g00008 500 PRINTS Tyrosine kinase catalytic domain signature 338 356 IPR001245 GO:0004672|GO:0006468
Gabi5011g00008 500 Pfam Ethylene-responsive protein kinase Le-CTR1 1 96 - -
Gabi5011g00008 500 Gene3D Transferase(Phosphotransferase) domain 1 302 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5011g00008 Gabi-Chr5011 70528 109907 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5011g00008 8 481 MAP Kinase Kinase Kinase AT5G03730 60.569 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi5011g00008 PK_Tyr_Ser-Thr 1.5e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5011g00008 K14510 - gmx:100807496 867.07