Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5011g00007 ATGCAGGGTGGTGTTCCCTCTGAATCTGAATCCGAATCTGATATCATCAGCAATCCCCATAATCGGACGGTGGTAGATGAACAACAAGCTTCGTTCAAAAGCTGGGCAAAGCAAACAGAGGAGAGTTATCAGTTGCAGCTTGCACTGGCGCTTCGTCTTTCCTCTCAGTATGCTTCTACCAATGATCCCAATTTCTTGGACTTGGGACCCACCTCTTCTTCTTCCTCATCCAATTCCGCTCAACCACTCTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAATTGTAGATGGCTTTTACCTAATCCATGGAATGGATGCGTATACATGGAATATGAGTACTGATATGCAGAATGTTGGTATGATTCCATCATTAGAATCACTGATGTCAGTTGAACTTTGTGATGACTCATCAATTGTAGTGGTTGCTATTGATAAATCTAGAGATCCTGGTTTGAGAGAACTGCAAAGTAGGGTAGTAAATCTTTCAAGCAACTGGATAACTACGAAAGATGCAACTGATAAGCTTGCAAATCTTGTGTATAGTAGGATGGGGGGAGGATCTTCAACTGAGGAGAATTTAGGTACACGCTGGCGGGAATGCACCCAAATCCTTAAAAGCCGCCTGCATTCTGTCATTCTTCCAATTGGAAGCCTACCCGTTGGCCTTTGTGTCCACCGAGCATTGCTCTTTAAAGTGTTAGCTGACTTAATCAATCTACCATGCCGAATTGCTAAGGGCTGCAAGTATTGTAGGATGGACCGGGGTGCTTCTTGTATAGTGCAATTTGGTCCTGACAGGGAGTATATGGTTGATTTGGTTGGAAGGCCTGGGGCAACGTGCCAACCTGATTCTGCTCTAAATTCTGCATCTTCAATGTTGATCCCTTCACCGTTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCTGAATTTACAAAGACATTAGCCCAATTGTATTTCATGGACAGTCAAGCACTGCATCTTGTATTTGATACGACGTCAGGAGGTGCTGTTAATTGTAGTGATGGAATAGATCTACTGCGAATTGAAGCTTTTGGTGCAAACTATACTGGTGGAAACAGCCATCTGGCTGATTTGAGTCCTGGTAGAGAGGAATACGTGTCTTACAAAGACGCAAACCAGTCGGTCATGAATTATCCAAGTCATGAAGTTGACCTTCACAAGGAGGAACTGGACATTCCATTGGGTGAACTTATTTTGAAGGAGAACATTGGTACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGTTCCGATGTTGCTGTGAAGATTCTCAAGGTGCAAGGTTTTGATGCAGAACAATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTGCGGCATCCAAATATTGTACTTTTAATGGGTGCAGTTTTTCAACCCCCAAATTTATCAATAGTAACAGAGTATTTATCAAGAGGTAGCTTGTATGAACTTCTGCATATACCCGGTGTTGGATTATCACTCAGTGAGAGGCGTCGTTTGAGAATGGCTTATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATTTGTTAGTTGATGATTCATACACAGTTAAGGTAGGTGACTTTGGTCTTTCACGTACAAAGGCAAATACATTTCTTTCATCTAAAACAGCAGCCGGAACTCCTGAATGGATGGCACCAGAAGTCATTCGAGGTGAATCATCAAATGAAAAATGTGATGTGTTCAGCTTTGGTGTAATCTTGTGGGAATTAGTGACCCTGCAACAGCCATGGAAACAATTAAATCCTTCACAGCATTAA 1857 0.4243 MQGGVPSESESESDIISNPHNRTVVDEQQASFKSWAKQTEESYQLQLALALRLSSQYASTNDPNFLDLGPTSSSSSSNSAQPLSHRFWVNGCLQYSDKIVDGFYLIHGMDAYTWNMSTDMQNVGMIPSLESLMSVELCDDSSIVVVAIDKSRDPGLRELQSRVVNLSSNWITTKDATDKLANLVYSRMGGGSSTEENLGTRWRECTQILKSRLHSVILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRMDRGASCIVQFGPDREYMVDLVGRPGATCQPDSALNSASSMLIPSPLCHPKFKPVETAEFTKTLAQLYFMDSQALHLVFDTTSGGAVNCSDGIDLLRIEAFGANYTGGNSHLADLSPGREEYVSYKDANQSVMNYPSHEVDLHKEELDIPLGELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDAEQFEEFLKEVSLMKRLRHPNIVLLMGAVFQPPNLSIVTEYLSRGSLYELLHIPGVGLSLSERRRLRMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVGDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGESSNEKCDVFSFGVILWELVTLQQPWKQLNPSQH 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5011g00007 618 SUPERFAMILY Protein kinase-like (PK-like) 384 616 IPR011009 -
Gabi5011g00007 618 Pfam Protein tyrosine and serine/threonine kinase 411 616 IPR001245 GO:0004672|GO:0006468
Gabi5011g00007 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Gabi5011g00007 618 CDD STKc_MAP3K-like 416 617 - -
Gabi5011g00007 618 ProSitePatterns Protein kinases ATP-binding region signature. 416 437 IPR017441 GO:0005524
Gabi5011g00007 618 MobiDBLite consensus disorder prediction 1 31 - -
Gabi5011g00007 618 PRINTS Tyrosine kinase catalytic domain signature 525 543 IPR001245 GO:0004672|GO:0006468
Gabi5011g00007 618 PRINTS Tyrosine kinase catalytic domain signature 572 582 IPR001245 GO:0004672|GO:0006468
Gabi5011g00007 618 PRINTS Tyrosine kinase catalytic domain signature 591 613 IPR001245 GO:0004672|GO:0006468
Gabi5011g00007 618 PRINTS Tyrosine kinase catalytic domain signature 484 497 IPR001245 GO:0004672|GO:0006468
Gabi5011g00007 618 Pfam Ethylene-responsive protein kinase Le-CTR1 80 283 - -
Gabi5011g00007 618 Gene3D Transferase(Phosphotransferase) domain 1 489 618 - -
Gabi5011g00007 618 FunFam Serine/threonine-protein kinase isoform 1 400 488 - -
Gabi5011g00007 618 Gene3D Phosphorylase Kinase; domain 1 403 488 - -
Gabi5011g00007 618 ProSiteProfiles Protein kinase domain profile. 410 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5011g00007 618 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 86 615 - -
Gabi5011g00007 618 SMART serkin_6 410 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5011g00007 Gabi-Chr5011 68586 106089 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5011g00007 35 617 MAP Kinase Kinase Kinase AT5G03730 57.781 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi5011g00007 PK_Tyr_Ser-Thr 8.9e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5011g00007 K14510 - gmx:100807496 993.801