Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5011g00006 ATGCAGGGTGGTGTTCCCTCTGAATCTGAATCCGAATCTGATATCATCAGCAATCCCCATAATCGGACGGTGGTAGATGAACAACAAGCTTCGTTCAAAAGCTGGGCAAAGCAAACAGAGGAGAGTTATCAGTTGCAGCTTGCACTGGCGCTTCGTCTTTCCTCTCAGTATGCTTCTACCAATGATCCCAATTTCTTGGACTTGGGACCCACCTCTTCTTCTTCCTCATCCAATTCCGCTCAACCACTCTCACACCGTTTTTGGGTAAATGGTTGTTTGCAATACTCTGACAAAATTGTAGATGGCTTTTACCTAATCCATGGAATGGATGCGTATACATGGAATATGAGTACTGATATGCAGAATGTTGGTATGATTCCATCATTAGAATCACTGATGTCAGTTGAACTTTGTGATGACTCATCAATTGTAGTGGTTGCTATTGATAAATCTAGAGATCCTGGTTTGAGAGAACTGCAAAGTAGGGTAGTAAATCTTTCAAGCAACTGGATAACTACGAAAGATGCAACTGATAAGCTTGCAAATCTTGTGTATAGTAGGATGGGGGGAGGATCTTCAACTGAGGAGAATTTAGGTACACGCTGGCGGGAATGCACCCAAATCCTTAAAAGCCGCCTGCATTCTGTCATTCTTCCAATTGGAAGCCTACCCGTTGGCCTTTGTGTCCACCGAGCATTGCTCTTTAAAGTGTTAGCTGACTTAATCAATCTACCATGCCGAATTGCTAAGGGCTGCAAGTATTGTAGGATGGACCGGGGTGCTTCTTGTATAGTGCAATTTGGTCCTGACAGGGAGTATATGGTTGATTTGGTTGGAAGGCCTGGGGCAACGTGCCAACCTGATTCTGCTCTAAATTCTGCATCTTCAATGTTGATCCCTTCACCGTTATGTCATCCAAAGTTCAAGCCAGTTGAAACAGCTGAATTTACAAAGACATTAGCCCAATTGTATTTCATGGACAGTCAAGCACTGCATCTTGTATTTGATACGACGTCAGGAGGTGCTGTTAATTGTAGTGATGGAATAGATCTACTGCGAATTGAAGCTTTTGGTGCAAACTATACTGGTGGAAACAGCCATCTGGCTGATTTGAGTCCTGGTAGAGAGGAATACGTGTCTTACAAAGACGCAAACCAGTCGGTCATGAATTATCCAAGTCATGAAGTTGACCTTCACAAGGAGGAACTGGACATTCCATTGGGTGAACTTATTTTGAAGGAGAACATTGGTACAGGGTCATTTGGAACTGTCCTTCGTGCAGACTGGCGTGGTTCCGATGTTGCTGTGAAGATTCTCAAGGTGCAAGGTTTTGATGCAGAACAATTTGAAGAATTTCTAAAGGAGGTCTCACTCATGAAGCGCCTGCGGCATCCAAATATTGTACTTTTAATGGGTGCAGTTTTTCAACCCCCAAATTTATCAATAGTAACAGAGTATTTATCAAGAGGTAGCTTGTATGAACTTCTGCATATACCCGGTGTTGGATTATCACTCAGTGAGAGGCGTCGTTTGAGAATGGCTTATGATGTGGCAAGTGGAATGAATTATCTTCATCAAATGAGACCTCCCATTGTTCATAGAGATTTGAAGTCTCCAAATTTGTTAGTTGATGATTCATACACAGTTAAGGTAGGTGACTTTGGTCTTTCACGTACAAAGGCAAATACATTTCTTTCATCTAAAACAGCAGCCGGAACTCCTGAATGGATGGCACCAGAAGTCATTCGAGGTGAATCATCAAATGAAAAATGTGATGTGTTCAGCTTTGGTGTAATCTTGTGGGAATTAGTGACCCTGCAACAGCCATGGAAACAATTAAATCCTTCACAGGTTGTTGCAGCTGTTGGTTTTATGGACAAAAGGCTAGAGATTCCAAGCCAGGTGAATCCTCAAGTAGCTGCCTTGATTGAGCTCTGCTGGGCTACTGAACCCTGGAGACGGCCTTCTTTCTCCTATGTTATGAAATGTTTGCAGCAAATAATTGCCGATTCCAAAAGCTCGAGCTTGGGTTCAGTGTATTTTGCTTAG 2049 0.428 MQGGVPSESESESDIISNPHNRTVVDEQQASFKSWAKQTEESYQLQLALALRLSSQYASTNDPNFLDLGPTSSSSSSNSAQPLSHRFWVNGCLQYSDKIVDGFYLIHGMDAYTWNMSTDMQNVGMIPSLESLMSVELCDDSSIVVVAIDKSRDPGLRELQSRVVNLSSNWITTKDATDKLANLVYSRMGGGSSTEENLGTRWRECTQILKSRLHSVILPIGSLPVGLCVHRALLFKVLADLINLPCRIAKGCKYCRMDRGASCIVQFGPDREYMVDLVGRPGATCQPDSALNSASSMLIPSPLCHPKFKPVETAEFTKTLAQLYFMDSQALHLVFDTTSGGAVNCSDGIDLLRIEAFGANYTGGNSHLADLSPGREEYVSYKDANQSVMNYPSHEVDLHKEELDIPLGELILKENIGTGSFGTVLRADWRGSDVAVKILKVQGFDAEQFEEFLKEVSLMKRLRHPNIVLLMGAVFQPPNLSIVTEYLSRGSLYELLHIPGVGLSLSERRRLRMAYDVASGMNYLHQMRPPIVHRDLKSPNLLVDDSYTVKVGDFGLSRTKANTFLSSKTAAGTPEWMAPEVIRGESSNEKCDVFSFGVILWELVTLQQPWKQLNPSQVVAAVGFMDKRLEIPSQVNPQVAALIELCWATEPWRRPSFSYVMKCLQQIIADSKSSSLGSVYFA 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5011g00006 682 CDD STKc_MAP3K-like 416 662 - -
Gabi5011g00006 682 SMART serkin_6 410 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5011g00006 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 531 543 IPR008271 GO:0004672|GO:0006468
Gabi5011g00006 682 FunFam Serine/threonine-protein kinase CTR1 489 674 - -
Gabi5011g00006 682 ProSitePatterns Protein kinases ATP-binding region signature. 416 437 IPR017441 GO:0005524
Gabi5011g00006 682 Gene3D Phosphorylase Kinase; domain 1 403 488 - -
Gabi5011g00006 682 MobiDBLite consensus disorder prediction 1 31 - -
Gabi5011g00006 682 Pfam Protein tyrosine and serine/threonine kinase 411 664 IPR001245 GO:0004672|GO:0006468
Gabi5011g00006 682 Pfam Ethylene-responsive protein kinase Le-CTR1 80 283 - -
Gabi5011g00006 682 ProSiteProfiles Protein kinase domain profile. 410 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5011g00006 682 PRINTS Tyrosine kinase catalytic domain signature 525 543 IPR001245 GO:0004672|GO:0006468
Gabi5011g00006 682 PRINTS Tyrosine kinase catalytic domain signature 484 497 IPR001245 GO:0004672|GO:0006468
Gabi5011g00006 682 PRINTS Tyrosine kinase catalytic domain signature 591 613 IPR001245 GO:0004672|GO:0006468
Gabi5011g00006 682 PRINTS Tyrosine kinase catalytic domain signature 572 582 IPR001245 GO:0004672|GO:0006468
Gabi5011g00006 682 PRINTS Tyrosine kinase catalytic domain signature 635 657 IPR001245 GO:0004672|GO:0006468
Gabi5011g00006 682 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 86 669 - -
Gabi5011g00006 682 Gene3D Transferase(Phosphotransferase) domain 1 489 678 - -
Gabi5011g00006 682 SUPERFAMILY Protein kinase-like (PK-like) 384 664 IPR011009 -
Gabi5011g00006 682 FunFam Serine/threonine-protein kinase isoform 1 400 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5011g00006 Gabi-Chr5011 68586 107670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5011g00006 35 668 MAP Kinase Kinase Kinase AT5G03730 58.321 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi5011g00006 PK_Tyr_Ser-Thr 3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5011g00006 K14510 - gmx:100807496 1093.57