Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5005g00010 ATGTTTCACTCAAATTTTGGCTGGGGTGCTCTCAAAATATTGACAAGGTGGCTGATATTCCTTAGTGTCTTGAGACTCAGTTATCCAACCACAGATCCTGATGTGGAAGGTGAAGCTTTGCTTGAATTTTTGAAGGCCCTCAATGATTCCAATAATCAAATTAGAGACTGGGATAGTTATTTTGTGAGCCCGTGCTATAGTTGGTCTAATGTCACTTGTAGTAACAGACATGTTATATCTCTGAGCCTGGCATCCAATGGATTTTCTGGAACCCTTTCTCCCTCAATTGCCAAATTGAAATATTTGGTTAGCTTGGAATTGCAGAACAACAATCTTTCAGGCCCCTTACCTGATTACATTGCCAACTTGACAAACCTAGAATATCTAAATCTTGCTGATAATAATTTTAAAGGTTCTATACCAGCTACATGGGGTCAACTTTCCAATCTAAAGCATCTGTTCTTGAGAGGGAATGACTTATCTGGACACATTCCCGATACTGTTGCAAACCTTAGTGGGTTGGCAGAACTGGATCTTTCATCTAATGGTCTTACTGGAAGTATCCCAATGCCACTCTTTTCGATTCCATTGTTTAATTTTTCAGATACGCTCCTTCGTTGTGGGTCTAGATTGGAGCAGCCTTGTGTTTCAAATTCTGCACTTTCTGCTTCAACCAACAAATCAAAACGTGCAGTAGTTGTTAGTTTTGCAAGTTGTGGTTCATTTGCCTTTTTGTGTCTTGTGGCTATCTTTGCCTATAGATGCCATCTCATGCAGAGACACAAAAGTGATGTCTTTTTTGATGTTCCAGGTGAAGATGAGAGCCAAATTTCCTTTTGGCAATTGAGAAGATTTTCATGGCGTGAACTCCAACATGCTACTAAAAATTTCAGTGAAAGCCATGTAGTTGGCCAGGGGGGCTTTGGAAAAGTTTATAGAGGAGTACTCTCAGATAGTACAAAAGTTGCTGTGAAACGCCTTGCTGATTATCATACTCCTGGTGGAGAGGCTGCATTCCAAAGAGAAGTTCAACTTCTAAGTGTTGCAGTTCATAAGAATCTCCTAAGATTGATTGGTTTCTGTACAACCTCAACTGAAAGAATCCTAGTGTATCCTTTCATGGAAAATCGAAGTGTAGCATATCGACTGAGAGATTTAAAACCGGATGAGAAAGGTTTGGACTGGCCAATGAGGAAACGGGTGGCTTTTGGTACAGCTCATGGCTTGGAGTATCTACATGAGCAATGCAATCCTAAGATAATACACCGGGATTTGAAGGCTGCAAATATCTTACTAGATGATGACTTTGAAGCTGTTCTAGGAGATTTTGGGCTAGCTAAGCTAGTAGATACAAGGATGACTCATGTTACCACTGAAGTGCGAGGCACAATGGGTCATATAGCCCCAGAATATTTATCCACAGGAAAATCATCAGAAAAGACAGATGTCTTTGGATATGGTATAACACTTCTTGAACTAGTAACTGGACAACGTACAATTGACTTCTTTCGGCTTCAAGAGGAGGAGGATGTTCTTCTGCTTGATCATATCAAAGAGCTACTGAGAGAAAATAGGCTGGAGGATATAGTGGATAGAAATTTGCAGACTTATGATCTCAAAGAAGTTGAGGCCATTGTTCATGTTGCATTGCTTTGCACTCAAGGTTTCCCTGAGGAACGTCCAACCATGTCAGAGGTAGTAAAGATGCTTAAGGGTGTGGGTTTGGCAGAGAGATGGGTTGACTGGGAGCAACATGAAGAGGTGAGTAATCAACTCATGTCTCACCAGTTTGTTTGGAATGATGAATCTACACCTCATCAAGAGGCTATACAACTTTCCAGAGCAAGATAG 1851 0.4084 MFHSNFGWGALKILTRWLIFLSVLRLSYPTTDPDVEGEALLEFLKALNDSNNQIRDWDSYFVSPCYSWSNVTCSNRHVISLSLASNGFSGTLSPSIAKLKYLVSLELQNNNLSGPLPDYIANLTNLEYLNLADNNFKGSIPATWGQLSNLKHLFLRGNDLSGHIPDTVANLSGLAELDLSSNGLTGSIPMPLFSIPLFNFSDTLLRCGSRLEQPCVSNSALSASTNKSKRAVVVSFASCGSFAFLCLVAIFAYRCHLMQRHKSDVFFDVPGEDESQISFWQLRRFSWRELQHATKNFSESHVVGQGGFGKVYRGVLSDSTKVAVKRLADYHTPGGEAAFQREVQLLSVAVHKNLLRLIGFCTTSTERILVYPFMENRSVAYRLRDLKPDEKGLDWPMRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTRMTHVTTEVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRTIDFFRLQEEEDVLLLDHIKELLRENRLEDIVDRNLQTYDLKEVEAIVHVALLCTQGFPEERPTMSEVVKMLKGVGLAERWVDWEQHEEVSNQLMSHQFVWNDESTPHQEAIQLSRAR 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5005g00010 616 Pfam Protein kinase domain 298 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5005g00010 616 FunFam Somatic embryogenesis receptor kinase 1 266 373 - -
Gabi5005g00010 616 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 18 579 - -
Gabi5005g00010 616 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Gabi5005g00010 616 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Gabi5005g00010 616 SMART serkin_6 297 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5005g00010 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Gabi5005g00010 616 Gene3D Transferase(Phosphotransferase) domain 1 374 590 - -
Gabi5005g00010 616 FunFam Leucine-rich repeat family protein 35 192 - -
Gabi5005g00010 616 Gene3D Phosphorylase Kinase; domain 1 266 373 - -
Gabi5005g00010 616 ProSitePatterns Protein kinases ATP-binding region signature. 303 325 IPR017441 GO:0005524
Gabi5005g00010 616 FunFam Somatic embryogenesis receptor-like kinase 1 374 590 - -
Gabi5005g00010 616 SUPERFAMILY L domain-like 36 205 - -
Gabi5005g00010 616 ProSiteProfiles Protein kinase domain profile. 297 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5005g00010 616 SUPERFAMILY Protein kinase-like (PK-like) 275 570 IPR011009 -
Gabi5005g00010 616 Gene3D Ribonuclease Inhibitor 33 217 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5005g00010 Gabi-Chr5005 80685 86881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5005g00010 10 611 Receptor kinase-like Gene Family AT5G65240 55.665 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi5005g00010 Pkinase 2.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5005g00010 - - gmx:100800886 935.25