Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5005g00009 ATGTTGACAACCATACCATGGACTCGTCTAGATGGTGAATTCTCCTTCGAGGTGAAAGTGGCTTATATGTTTCACTCAAATTTTGGCTGGGGTGCTCTCAAAATATTGACAAGGTGGCTGATATTCCTTAGTGTCTTGAGACTCAGTTATCCAACCACAGATCCTGATGTGGAAGGTGAAGCTTTGCTTGAATTTTTGAAGGCCCTCAATGATTCCAATAATCAAATTAGAGACTGGGATAGTTATTTTGTGAGCCCGTGCTATAGTTGGTCTAATGTCACTTGTAGTAACAGACATGTTATATCTCTGAGCCTGGCATCCAATGGATTTTCTGGAACCCTTTCTCCCTCAATTGCCAAATTGAAATATTTGGTTAGCTTGGAATTGCAGAACAACAATCTTTCAGGCCCCTTACCTGATTACATTGCCAACTTGACAAACCTAGAATATCTAAATCTTGCTGATAATAATTTTAAAGGTTCTATACCAGCTACATGGGGTCAACTTTCCAATCTAAAGCATCTGTTCTTGAGAGGGAATGACTTATCTGGACACATTCCCGATACTGTTGCAAACCTTAGTGGGTTGGCAGAACTGGATCTTTCATCTAATGGTCTTACTGGAAGTATCCCAATGCCACTCTTTTCGATTCCATTGTTTAATTTTTCAGATACGCTCCTTCGTTGTGGGTCTAGATTGGAGCAGCCTTGTGTTTCAAATTCTGCACTTTCTGCTTCAACCAACAAATCAAAACGTGCAGTAGTTGTTAGTTTTGCAAGTTGTGGTTCATTTGCCTTTTTGTGTCTTGTGGCTATCTTTGCCTATAGATGCCATCTCATGCAGAGACACAAAAGTGATGTCTTTTTTGATGTTCCAGGTGAAGATGAGAGCCAAATTTCCTTTTGGCAATTGAGAAGATTTTCATGGCGTGAACTCCAACATGCTACTAAAAATTTCAGTGAAAGCCATGTAGTTGGCCAGGGGGGCTTTGGAAAAGTTTATAGAGGAGTACTCTCAGATAGTACAAAAGTTGCTGTGAAACGCCTTGCTGATTATCATACTCCTGGTGGAGAGGCTGCATTCCAAAGAGAAGTTCAACTTCTAAGTGTTGCAGTTCATAAGAATCTCCTAAGATTGATTGGTTTCTGTACAACCTCAACTGAAAGAATCCTAGTGTATCCTTTCATGGAAAATCGAAGTGTAGCATATCGACTGAGAGATTTAAAACCGGATGAGAAAGGTTTGGACTGGCCAATGAGGAAACGGGTGGCTTTTGGTACAGCTCATGGCTTGGAGTATCTACATGAGCAATGCAATCCTAAGATAATACACCGGGATTTGAAGGCTGCAAATATCTTACTAGATGATGACTTTGAAGCTGTTCTAGGAGATTTTGGGCTAGCTAAGCTAGTAGATACAAGGATGACTCATGTTACCACTGAAGTGCGAGGCACAATGGGTCATATAGCCCCAGAATATTTATCCACAGGAAAATCATCAGAAAAGACAGATGTCTTTGGATATGGTATAACACTTCTTGAACTAGTAACTGGACAACGTACAATTGACTTCTTTCGGCTTCAAGAGGAGGAGGATGTTCTTCTGCTTGATCATATCAAAGAGCTACTGAGAGAAAATAGGCTGGAGGATATAGTGGATAGAAATTTGCAGACTTATGATCTCAAAGAAGTTGAGGCCATTGTTCATGTTGCATTGCTTTGCACTCAAGGTTTCCCTGAGGAACGTCCAACCATGTCAGAGGTAGTAAAGATGCTTAAGGGTGTGGGTTTGGCAGAGAGATGGGTTGACTGGGAGCAACATGAAGAGGTGAGTAATCAACTCATGTCTCACCAGTTTGTTTGGAATGATGAATCTACACCTCATCAAGAGGCTATACAACTTTCCAGAGCAAGATAG 1917 0.4095 MLTTIPWTRLDGEFSFEVKVAYMFHSNFGWGALKILTRWLIFLSVLRLSYPTTDPDVEGEALLEFLKALNDSNNQIRDWDSYFVSPCYSWSNVTCSNRHVISLSLASNGFSGTLSPSIAKLKYLVSLELQNNNLSGPLPDYIANLTNLEYLNLADNNFKGSIPATWGQLSNLKHLFLRGNDLSGHIPDTVANLSGLAELDLSSNGLTGSIPMPLFSIPLFNFSDTLLRCGSRLEQPCVSNSALSASTNKSKRAVVVSFASCGSFAFLCLVAIFAYRCHLMQRHKSDVFFDVPGEDESQISFWQLRRFSWRELQHATKNFSESHVVGQGGFGKVYRGVLSDSTKVAVKRLADYHTPGGEAAFQREVQLLSVAVHKNLLRLIGFCTTSTERILVYPFMENRSVAYRLRDLKPDEKGLDWPMRKRVAFGTAHGLEYLHEQCNPKIIHRDLKAANILLDDDFEAVLGDFGLAKLVDTRMTHVTTEVRGTMGHIAPEYLSTGKSSEKTDVFGYGITLLELVTGQRTIDFFRLQEEEDVLLLDHIKELLRENRLEDIVDRNLQTYDLKEVEAIVHVALLCTQGFPEERPTMSEVVKMLKGVGLAERWVDWEQHEEVSNQLMSHQFVWNDESTPHQEAIQLSRAR 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5005g00009 638 ProSiteProfiles Protein kinase domain profile. 319 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5005g00009 638 FunFam Somatic embryogenesis receptor kinase 1 288 395 - -
Gabi5005g00009 638 SMART serkin_6 319 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5005g00009 638 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
Gabi5005g00009 638 FunFam Somatic embryogenesis receptor-like kinase 1 396 612 - -
Gabi5005g00009 638 Pfam Protein kinase domain 320 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi5005g00009 638 Gene3D Phosphorylase Kinase; domain 1 288 395 - -
Gabi5005g00009 638 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 40 601 - -
Gabi5005g00009 638 Gene3D Ribonuclease Inhibitor 55 239 IPR032675 -
Gabi5005g00009 638 Pfam Leucine rich repeat 146 206 IPR001611 GO:0005515
Gabi5005g00009 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 442 454 IPR008271 GO:0004672|GO:0006468
Gabi5005g00009 638 SUPERFAMILY L domain-like 58 227 - -
Gabi5005g00009 638 SUPERFAMILY Protein kinase-like (PK-like) 297 592 IPR011009 -
Gabi5005g00009 638 Gene3D Transferase(Phosphotransferase) domain 1 396 612 - -
Gabi5005g00009 638 FunFam Leucine-rich repeat family protein 57 214 - -
Gabi5005g00009 638 Pfam Leucine rich repeat N-terminal domain 57 96 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5005g00009 Gabi-Chr5005 80684 86881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5005g00009 32 633 Receptor kinase-like Gene Family AT5G65240 55.902 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Gabi5005g00009 Pkinase 2.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5005g00009 - - qsa:O6P43_030263 935.636