Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5005g00007 ATGGCTTCTTCTCCACCTTTGCCAATAGCATACGAAGCAGGGACGAGTTTAGCGGTGCCAGAATGGTTGAACAAAGGGGATAACGCATGGCAAATGATATCAGCAACACTGGTTGGGATTCAAAGCATGCCAGGGTTGGTGATCTTATACGGAAGCATAGTAAAGAAAAAATGGGCCGTGAACTCAGCTTTCATGGCTCTCTATGCATTTGCAGCAGTTATTATTTGTTGGGTTACATGGGCTTACAAGATGTCCTTTGGGCGTAAACTGTTACCCTTTTGGGGAAGAGCTGGTCCTGCCTTGGGACAGAAGTTTCTGATCAAACATGCGATTGAGCCGTTTTATCCTATGGCCAGTATGGTGTGGTTCCAGTGTGTTTTTGCTGCTATCACTGTTGTTATCTTGGCAGGATCAGTTTTGGCTAGGATGAACTTCAAGGCGTGGATGATGTTTGTGCCTCTATGGGTCACTTTTAGTTACACTGTTGGTGCTTTCAGCTTGTGGGGTGGTGGCTTCTTGTTCCAGTGGGGTGTTATGGATTATTCTGGTGGTTATGTCATTCATCTTTCTTCTGGTATTGCTGGCTTCACTGCTGCTTATTGGGTGGGGCCAAGATCAAAGAAGGACAGGGAGAGATTCCCACCAAACAATGTGTTACTAATGTTGGCAGGAGCAGGACTACTATGGCTAGGATGGGCAGGTTTCAACGGAGGAGATCCTTATGCAGCCAACACAGATTCATCCATGGCAGTAATCAACACCAACGTCAGCGCCGCCACAAGCCTCCTTGTGTGGACATGGCTCGACGTTATTTACTTCAAGAAACCCTCCGTTATTGGAGCCGTTCAGGGCATGATCACTGGCTTAGTTTGCATCACTCCTGGCGCTGGCCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTTCTATCAGGAAGTGTGCCATGGTTCACTATGATGATATTAGGCAAGAAGTTAAAAGTGTTCCAAAATGTAGATGACACCCTAGCGGTGTTCCACACTCATGCTGTGGCCGGATTCCTTGGCGGTATACTCACCGGCCTCTTCGCGGAGCCCCGTCTAAGTGCACTCTTCTTGCCCGTTACCAACTCTAGAGGTGGAGTCTATGGAGGCTCCGGTGCAGTCCAAATCCTTAAACAAATAGTGGGAGGATTGTTCATCATTGGATGGAACGTTGTGGTCACTTCAATTGTTTGTCTAGTTATAAATTTCATCGTTCCACTGAGAATGCCTGAGGAGGAGTTGCTGATTGGGGATGATGCAGTTCATGGGGAGGAAGCTTATGCTTTGTGGGGTGATGGTGAGAAACTTGGAATTTATGTAGATGAAACCAGCCACCTTAGAGCGGCATCAAGTGGTGCCACTCAAGTCGTCTAG 1398 0.4764 MASSPPLPIAYEAGTSLAVPEWLNKGDNAWQMISATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGRKLLPFWGRAGPALGQKFLIKHAIEPFYPMASMVWFQCVFAAITVVILAGSVLARMNFKAWMMFVPLWVTFSYTVGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYAANTDSSMAVINTNVSAATSLLVWTWLDVIYFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFTMMILGKKLKVFQNVDDTLAVFHTHAVAGFLGGILTGLFAEPRLSALFLPVTNSRGGVYGGSGAVQILKQIVGGLFIIGWNVVVTSIVCLVINFIVPLRMPEEELLIGDDAVHGEEAYALWGDGEKLGIYVDETSHLRAASSGATQVV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5005g00007 465 ProSitePatterns Ammonium transporters signature. 180 205 IPR018047 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00007 465 Gene3D Ammonium transporter AmtB like domains 9 438 IPR029020 -
Gabi5005g00007 465 PRINTS Rhesus blood group protein signature 124 140 IPR002229 GO:0005886
Gabi5005g00007 465 PRINTS Rhesus blood group protein signature 250 272 IPR002229 GO:0005886
Gabi5005g00007 465 PRINTS Rhesus blood group protein signature 219 237 IPR002229 GO:0005886
Gabi5005g00007 465 NCBIfam ammonium transporter 27 435 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00007 465 Pfam Ammonium Transporter Family 29 435 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00007 465 PANTHER AMMONIUM TRANSPORTER MEP2 15 443 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00007 465 FunFam Ammonium transporter 10 438 - -
Gabi5005g00007 465 SUPERFAMILY Ammonium transporter 22 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5005g00007 Gabi-Chr5005 70482 75277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5005g00007 117 455 Inorganic Solute Cotransporters AT2G38290 70.796 8.66e-168 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5005g00007 K03320 - gmx:100785993 832.787