Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5005g00006 ATGGCTTCTTCTCCACCTTTGCCAATAGCATACGAAGCAGGGACGAGTTTAGCGGTGCCAGAATGGTTGAACAAAGGGGATAACGCATGGCAAATGATATCAGCAACACTGGTTGGGATTCAAAGCATGCCAGGGTTGGTGATCTTATACGGAAGCATAGTAAAGAAAAAATGGGCCGTGAACTCAGCTTTCATGGCTCTCTATGCATTTGCAGCAGTTATTATTTGTTGGGTTACATGGGCTTACAAGATGTCCTTTGGGCGTAAACTGTTACCCTTTTGGGGAAGAGCTGGTCCTGCCTTGGGACAGAAGTTTCTGATCAAACATGCGGCGCTGCCGGCCACCGCGCATTTCTATCACAACGGCGTCGTGGAGACGGCGGAGATTGAGCCGTTTTATCCTATGGCCAGTATGGTGTGGTTCCAGTGTGTTTTTGCTGCTATCACTGTTGTTATCTTGGCAGGATCAGTTTTGGCTAGGATGAACTTCAAGGCGTGGATGATGTTTGTGCCTCTATGGGTCACTTTTAGTTACACTGTTGGTGCTTTCAGCTTGTGGGGTGGTGGCTTCTTGTTCCAGTGGGGTGTTATGGATTATTCTGGTGGTTATGTCATTCATCTTTCTTCTGGTATTGCTGGCTTCACTGCTGCTTATTGGGTGGGGCCAAGATCAAAGAAGGACAGGGAGAGATTCCCACCAAACAATGTGTTACTAATGTTGGCAGGAGCAGGACTACTATGGCTAGGATGGGCAGGTTTCAACGGAGGAGATCCTTATGCAGCCAACACAGATTCATCCATGGCAGTAATCAACACCAACGTCAGCGCCGCCACAAGCCTCCTTGTGTGGACATGGCTCGACGTTATTTACTTCAAGAAACCCTCCGTTATTGGAGCCGTTCAGGGCATGATCACTGGCTTAGTTTGCATCACTCCTGGCGCTGGCCTGGTTCAAGGATGGGCTGCCATAGTGATGGGAGTTCTATCAGGAAGTGTGCCATGGTTCACTATGATGATATTAGGCAAGAAGTTAAAAGTGTTCCAAAATGTAGATGACACCCTAGCGGTGTTCCACACTCATGCTGTGGCCGGATTCCTTGGCGGTATACTCACCGGCCTCTTCGCGGAGCCCCGTCTAAGTGCACTCTTCTTGCCCGTTACCAACTCTAGAGGTGGAGTCTATGGAGGCTCCGGTGCAGTCCAAATCCTTAAACAAATAGTGGGAGGATTGTTCATCATTGGATGGAACGTTGTGGTCACTTCAATTGTTTGTCTAGTTATAAATTTCATCGTTCCACTGAGAATGCCTGAGGAGGAGTTGCTGATTGGGGATGATGCAGTTCATGGGGAGGAAGCTTATGCTTTGTGGGGTGATGGTGAGAAACTTGGAATTTATGTAGATGAAACCAGCCACCTTAGAGCGGCATCAAGTGGTGCCACTCAAGTCGTCTAG 1452 0.4842 MASSPPLPIAYEAGTSLAVPEWLNKGDNAWQMISATLVGIQSMPGLVILYGSIVKKKWAVNSAFMALYAFAAVIICWVTWAYKMSFGRKLLPFWGRAGPALGQKFLIKHAALPATAHFYHNGVVETAEIEPFYPMASMVWFQCVFAAITVVILAGSVLARMNFKAWMMFVPLWVTFSYTVGAFSLWGGGFLFQWGVMDYSGGYVIHLSSGIAGFTAAYWVGPRSKKDRERFPPNNVLLMLAGAGLLWLGWAGFNGGDPYAANTDSSMAVINTNVSAATSLLVWTWLDVIYFKKPSVIGAVQGMITGLVCITPGAGLVQGWAAIVMGVLSGSVPWFTMMILGKKLKVFQNVDDTLAVFHTHAVAGFLGGILTGLFAEPRLSALFLPVTNSRGGVYGGSGAVQILKQIVGGLFIIGWNVVVTSIVCLVINFIVPLRMPEEELLIGDDAVHGEEAYALWGDGEKLGIYVDETSHLRAASSGATQVV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5005g00006 483 ProSitePatterns Ammonium transporters signature. 198 223 IPR018047 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00006 483 SUPERFAMILY Ammonium transporter 22 435 - -
Gabi5005g00006 483 Gene3D Ammonium transporter AmtB like domains 9 456 IPR029020 -
Gabi5005g00006 483 Pfam Ammonium Transporter Family 29 453 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00006 483 NCBIfam ammonium transporter 27 453 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00006 483 PRINTS Rhesus blood group protein signature 237 255 IPR002229 GO:0005886
Gabi5005g00006 483 PRINTS Rhesus blood group protein signature 142 158 IPR002229 GO:0005886
Gabi5005g00006 483 PRINTS Rhesus blood group protein signature 268 290 IPR002229 GO:0005886
Gabi5005g00006 483 PANTHER AMMONIUM TRANSPORTER MEP2 15 461 IPR001905 GO:0008519|GO:0016020|GO:0072488
Gabi5005g00006 483 FunFam Ammonium transporter 10 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5005g00006 Gabi-Chr5005 70482 75277 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5005g00006 135 473 Inorganic Solute Cotransporters AT2G38290 70.796 1.61e-167 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5005g00006 K03320 - gmx:100785993 863.603