Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5002g00001 ATGGATATAGATCTTAGGTTACCTTCTGGGGAACATGATAAAGAGGATGAAGAAACAACTGCAATTGATAACATGTTGGACAGTGAAGAAAAATTGCATAATGGAGGTATGGACGGCAGAAATATGGTTGATGCTGGCATTGAGGTACATGCTCTAACTGGTGGAGATTTGAATTCACCCACAGTTGATATGGTGATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGCATGGAATTTGAGTCTCACGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGGTCAATGGGATTCAACACTGCAATACAAAATAGTCGCCGTTCAAAAACATCAAGAGAATTTATAGATGCGAAGTTTGCATGTTCCAGGTATGGAACAAAACGGGAGTATGACAAATCATTTAATCGACCACGTGCACGACAGAACAAACAGGATTCTGAAAACTCAACTGGTCGAAGATCTTGTTCTAAGACAGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCCAGATGGAAAATGGGTTATACATAGCTTTGTAAAGGAGCATAATCATGAGCTTTTACCAGCCCAAGCGGTCAGCGAACAAACAAGAAGAATGTATGCTGCGATGGCGAGGCAGTTTGCTGAATACAAAACTGTGGTTGGTCTTAAGAATGAGAAGAATCTATTTGATAAAGGTCGAAATGTGGGCCTGGAGTCGGGGGAGGCAAAACTTATGCTTGATTTTTTTATACAGATGCAAAATATGAATTCTAACTTCTTTTATGCAGTAGATCTTGGTGAGGATCAACGTCTGAAAAATCTTTTGTGGATTGACGCTAAAAGTAGGCATGACTATGTCAACTTTTGTGATGTAGTGTCATTTGATACCACCTATGTTAGAAACAAATATAAGATGCCTCTTGCACTTTTTGTTGGAGTGAACCAGCACTACCAATTTATTTTACTTGGTTGTGCCTTGATATCGGATGAAAGTGCCGCAACTTTTTCTTGGCTAATGCGGACATGGCTGAAAGGAGTTGGTGGTCAAGTTCCAAAAGTGATAATTACTGACCTTGACAAGACTTTGAAGTCAGTTATTTCAGATATTTTTCCTAATTCTTGGCATTGTGTCTGCTTATGGCATATATTGGGGAAGGTATCTGAGAATTTAGCTCCTGTCATTAAAAAACATGAGAATTTTATGGCAAAATTTGAAAAATGCATATACAGGTCATTGACCAGTGATGAATTTGATAAGAGATGGTGGAAAATTGTTGATAGGTGTGAACTTCGAGAGGATGAATGCATGCAGTCATTGTATGAAGATCGTAAGTTGTGGGCACCAACATTCATGAGGGATGTTTTCTTAGGTGGTATGTCTACTGCTCAGCGATCTGAAAGTGTAAATTCCTTCTTTGACAAATATGTTCATAAGAAGACCTCTGTGCAAGATTTTGTCAAACAGTATGAAGCAATCTTGCAAGACAGGTATGAGGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACCTTAAAAACTCCTTCACCTTTAGAAAAGAGCGTTGCAGGGATTTGCACACATGCTGTATTCAAGAAGATTCAAGCTGAGATTGTTGGTGCAGTTGCTTGTCATCCTAAAGCTGGCGAGCAGGATGAAACAACTGTTACTCACAGGGTTCATGATATGGAATCAAGTAAAGACTTCTTTGTTGTGGTGAATGCCGAAAAATCAGAGGTGTCTTGTTTATGTCGGTTATTCGAATATAGAGGTTATCTTTGTCGACATGCATTGGTTGTTCTTCAATATTCGGGTCATTCAGTGTTCCCATCTCAGTATATCTTGAAACGGTGGACAAAAGATGCAAAAGTCAGGAATATAATGGGAGAAGAATCTGAACATATGTTGGCTAGGGTGCAACGATACAATGATTTGTGTCAGCGAGCAGTAAAACTGAGTGAAGAGGGATCTTTGTCTCAAGAGAGTTATAGTATTGCATTCCATGCACTACATGAAGCACACAAAAATTGTGTGAGCGTTAACAATTCTAGTAAGAGTCCTACAGAAGCTGGTACGTCAGGGGCTCATGGTCAGCTTTCCACCGAAGAAGATACCCAAAGTAGAAATATGGGCAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTTAGCTCTGAGGCAGAAGTGATGACTGTTGGGGCACTAGACAACTTGCAACAAATGGACAAATTCAGCACAAGAGCTGCCGTAACCCTTGATGGTTATTATGGCGCGCAACAGAGTGTGCAGGGGATGTTGAACTTAATGGGACCAACACGGGATGATTACTACGGGAATCAACAGACTCTTCAGGGGCTGGGACCAATAAGTTCGATACCAACTAGCCACGATGGTTATTATGGTGCACATCAGAGCATGCCTGGTCTGGCACAACTGGATTTTTTGCGAACTGGTTTCACATATGGCATTCGGGATGATCCTAATGTGAGAGCAGCACAGTTGCATGAGGATCCATCAAGACATGCGTGA 2532 0.4044 MDIDLRLPSGEHDKEDEETTAIDNMLDSEEKLHNGGMDGRNMVDAGIEVHALTGGDLNSPTVDMVMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQDSENSTGRRSCSKTDCKASMHVKRRPDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAAMARQFAEYKTVVGLKNEKNLFDKGRNVGLESGEAKLMLDFFIQMQNMNSNFFYAVDLGEDQRLKNLLWIDAKSRHDYVNFCDVVSFDTTYVRNKYKMPLALFVGVNQHYQFILLGCALISDESAATFSWLMRTWLKGVGGQVPKVIITDLDKTLKSVISDIFPNSWHCVCLWHILGKVSENLAPVIKKHENFMAKFEKCIYRSLTSDEFDKRWWKIVDRCELREDECMQSLYEDRKLWAPTFMRDVFLGGMSTAQRSESVNSFFDKYVHKKTSVQDFVKQYEAILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHAVFKKIQAEIVGAVACHPKAGEQDETTVTHRVHDMESSKDFFVVVNAEKSEVSCLCRLFEYRGYLCRHALVVLQYSGHSVFPSQYILKRWTKDAKVRNIMGEESEHMLARVQRYNDLCQRAVKLSEEGSLSQESYSIAFHALHEAHKNCVSVNNSSKSPTEAGTSGAHGQLSTEEDTQSRNMGKSNKKKNPTKKKKVSSEAEVMTVGALDNLQQMDKFSTRAAVTLDGYYGAQQSVQGMLNLMGPTRDDYYGNQQTLQGLGPISSIPTSHDGYYGAHQSMPGLAQLDFLRTGFTYGIRDDPNVRAAQLHEDPSRHA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5002g00001 843 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 68 677 IPR031052 GO:0006355
Gabi5002g00001 843 MobiDBLite consensus disorder prediction 677 728 - -
Gabi5002g00001 843 Pfam SWIM zinc finger 569 602 IPR007527 GO:0008270
Gabi5002g00001 843 ProSiteProfiles Zinc finger SWIM-type profile. 568 604 IPR007527 GO:0008270
Gabi5002g00001 843 MobiDBLite consensus disorder prediction 132 165 - -
Gabi5002g00001 843 Pfam FAR1 DNA-binding domain 89 191 IPR004330 -
Gabi5002g00001 843 Pfam MULE transposase domain 288 380 IPR018289 -
Gabi5002g00001 843 SMART 26again6 579 606 IPR006564 GO:0008270
Gabi5002g00001 843 MobiDBLite consensus disorder prediction 677 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5002g00001 Gabi-Chr5002 31693 41210 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi5002g00001 FAR1 2.1e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5002g00001 - - gmx:100817034 1591.25