Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5000g00012 ATGAAAGAAGCGTGGAGATTCATGACTTGGTTAAAGCTCTGTCGCATGGTGATGTTTGTGGTGGTGGTGTCTTTATTCCCGTTGAGCATGAAACACGCTCAGTGTTCGACTCTGAACAGCGAAGGGTTGGCGTTGCAAAGGATGAAGGAGAGGGTGGTGAGAGACCCATCAGGGGCTTTATCGAGTTGGAATGGCGAAGAAGGAGTCATTGATCCATGCTTGTGGTTTGGAGTGGAGTGCTTCAATGGCAATGTTGTCACCTTGGATTTGAAAGATCTATGTCTTCACGGAACACTAGCACCTGAAATTGGGAAGCTGGTTCACATAAAATCAATCATTTTGCGAAACAATTCTTTCTTCGGAGATATCCCTAAGGAGATACTACAATTAGAGGAACTGGAAGTTCTTGATTTGGGATATAACAACTTTAGTGGATCATTTCCTTCTGATGACCTTGGCAACAATCTATCCCTGACCACCCTTTTATTGGACAACAATGACTATCTTGTCAACTTAACTCCAGAAGTGTATAATCTTAAGATGATTTCTGAATTGCATGTACATGAAGAACAACTAACTGGTGTTGCACCCACTAGAGAAGCATGTATTTTGCTTTCTGCTTGTGACAGGCACATTGGCCAGCATGGAGATATAGTAGCACACATGCGGCAACTTCTCCAAGTTGAAAATGCTGCTAACTCACCCAAAACTAAGAAGGATGATAATAAAGAGACTATTTCACCATCACCATCATCTTTTCCCACTTCATTATCACCAGTTTCTGAGCCTTTCTCACCATCACCATCAATAGTTTCACCATCAGAAAGTCCTTCAAATTCACCAACAACATCATTTTTTCCCTCACCACTAAGATCTCCTATAGTTTCCCCTTCACCATCACCCTCTCCCTCCAGTATCTTTTTCACTTTTCCACCCTCACCTTCACCTGTGGTAGCACCAACTCCAGACATAACATCTCCAGCAAATCCACCTACTATTGCATCAACACCATCACATTCCCCTGCTTCATCATCAAACCAAGGGAATTCAAACAGTTCAAACCCAAAGCATCATTCTGTGATTATTTGGTCCACAGTTGGGAGCTTCTCCTTCTTGATTTTGGTGTCTGCCATTTTCCTTTGCTTCAGAAATAATAAAGTTGTAACTGTGAAACCTTGGGCCACAGGGTTGAGTGGCCAGTTGCAGAGAGCATTTGTAACAGGTGTTCCAAGTCTGAAACGAGCAGAACTAGAAGCAGCTTGTGAAGATTTCAGCAACATAATTGGTTCTCAGCCAGAGGGGACTGTTTATAAGGGGACTCTCTCCAGTGGAGTTGAGATAGCTGTAGCATCCTCTGCAGTGACTTCATCTCAAAACTGGTCAAAAGATATGGAAGCTCAATTCCGAAAGAAGATAGAGGTATTATCAAGGGTGAACCACAAGAATTTTGTGAATCTTATTGGGTATTGTGAAGAGAAAAAGCCATTCACAAGGATGATGGTTTTTGAGTATGCTCCAAATGGAACGCTATTTGAGCATCTACACATTAGAGAAGCAGAACAACTAGACTGGGTAATGAGAATGAGGATAGCTATGGGAATAGCCTACTGTCTGGAGCACTTGCATCAGCTGACACCACCCATTGCCCACAGAAACCTGCTATCTTCCTCTATATACCTGACTGAAGATTATGCTGCTAAATTATCGGACCTTAGTTTCTGGGATGACATAGTTGCTGCAAAGAAGGGTTCTGAAGCCACACAGCTCTTGGAAACAACTTCAGCATATATAGAGGGAAATGTTTATAGTTTTGGAGTAATATTGTTTGAATTGATAACAGGGAGAATCCCCTATGCAGTGGACAATGGCTTTCTTTTTGATTGGGCAGCAGAATACATAAGGGGGCAACCCTTGAGGGACTTGGTGGATACAAGTCTGAACTCTTTGCAAGCACATGAAATTGACAAATGGTCTGAAGTGATTAACAACTGTGTACATCCAGATCCAGAAAAAAGGCCAACTATGAGAGAGGTCACTGCTAAGTTGAAGGAAATCACTGCTATGGAGCCTGATGGAGCAGCTCCAAAATCATCCCCTCTTTGGTGGGCTGAGTTAGAAATTATGTCAACTGATTTAAGTTCAGACATGAATCCATAA 2157 0.4233 MKEAWRFMTWLKLCRMVMFVVVVSLFPLSMKHAQCSTLNSEGLALQRMKERVVRDPSGALSSWNGEEGVIDPCLWFGVECFNGNVVTLDLKDLCLHGTLAPEIGKLVHIKSIILRNNSFFGDIPKEILQLEELEVLDLGYNNFSGSFPSDDLGNNLSLTTLLLDNNDYLVNLTPEVYNLKMISELHVHEEQLTGVAPTREACILLSACDRHIGQHGDIVAHMRQLLQVENAANSPKTKKDDNKETISPSPSSFPTSLSPVSEPFSPSPSIVSPSESPSNSPTTSFFPSPLRSPIVSPSPSPSPSSIFFTFPPSPSPVVAPTPDITSPANPPTIASTPSHSPASSSNQGNSNSSNPKHHSVIIWSTVGSFSFLILVSAIFLCFRNNKVVTVKPWATGLSGQLQRAFVTGVPSLKRAELEAACEDFSNIIGSQPEGTVYKGTLSSGVEIAVASSAVTSSQNWSKDMEAQFRKKIEVLSRVNHKNFVNLIGYCEEKKPFTRMMVFEYAPNGTLFEHLHIREAEQLDWVMRMRIAMGIAYCLEHLHQLTPPIAHRNLLSSSIYLTEDYAAKLSDLSFWDDIVAAKKGSEATQLLETTSAYIEGNVYSFGVILFELITGRIPYAVDNGFLFDWAAEYIRGQPLRDLVDTSLNSLQAHEIDKWSEVINNCVHPDPEKRPTMREVTAKLKEITAMEPDGAAPKSSPLWWAELEIMSTDLSSDMNP 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5000g00012 718 MobiDBLite consensus disorder prediction 231 297 - -
Gabi5000g00012 718 MobiDBLite consensus disorder prediction 318 356 - -
Gabi5000g00012 718 Gene3D Phosphorylase Kinase; domain 1 398 504 - -
Gabi5000g00012 718 FunFam Nuclear pore complex protein NUP107 38 198 - -
Gabi5000g00012 718 Gene3D Transferase(Phosphotransferase) domain 1 505 694 - -
Gabi5000g00012 718 Pfam Leucine rich repeat N-terminal domain 39 80 IPR013210 -
Gabi5000g00012 718 Gene3D Ribonuclease Inhibitor 37 243 IPR032675 -
Gabi5000g00012 718 PANTHER PROTEIN MALE DISCOVERER 2 18 710 - -
Gabi5000g00012 718 MobiDBLite consensus disorder prediction 328 356 - -
Gabi5000g00012 718 Pfam Protein tyrosine and serine/threonine kinase 425 682 IPR001245 GO:0004672|GO:0006468
Gabi5000g00012 718 SUPERFAMILY L domain-like 36 199 - -
Gabi5000g00012 718 MobiDBLite consensus disorder prediction 246 291 - -
Gabi5000g00012 718 SUPERFAMILY Protein kinase-like (PK-like) 406 682 IPR011009 -
Gabi5000g00012 718 FunFam Inactive receptor-like serine/threonine-protein kinase 396 504 - -
Gabi5000g00012 718 ProSiteProfiles Protein kinase domain profile. 422 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5000g00012 Gabi-Chr5000 102993 107982 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5000g00012 368 685 Receptor kinase-like Gene Family AT1G69730 32.092 9.37e-40 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Gabi5000g00012 PK_Tyr_Ser-Thr 5.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5000g00012 - - gmx:100814122 946.421