Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi5000g00002 ATGGCTGCAGCGTTGGAATGCTGGTCGAGCCGTGGCGGCAACAACGACGAGGACATGGTGGAGCAGGTTCTCATGCAGAGATCAGAAGGTCCAACGGTTCAAGCGAAGGACTCATCTTTGGTTCAGAAGAAGCTTCAGAAGCTCACACGCAACGTTTCCGAGGCCATAGCATCAATCAAGAACACCCTCAACCTTAACATGAACACCAACCTCGACTCTTCGAAACTCGATGCTTCTCGCAATGTCGTGTGGGGAACCGTTGTTCGTAACCTCACACAGCTTTACCCTGGTAGCCAGCTCCCCGAGAAGCTCATGTCCAACATTCGCAAGCACTATGATTCCTTGCCTCTCAGTTATTCTCAGGCGGGGTTTGATGTGAAAGATGTGTTTCTTCACATGAAGCTGATGGAGCAAGCTATGGAAGATGAACAGGCTGCGATTTTGATTCAGGAGGAGTGTGATGGTGAGATTCAGCTTCAGGGGTCTTTGTTCAAGTTGACATTTGCTTGCAACTCTCCAATATCGTGGCCTGCTATGTCGGGTGCGTTGGATAGTTCCTCTATTTGCTGCAAGAAGATTCAGATCTTTGAGAAGAAAGGTTTAACCCTTGGTATTGTTCTTCTTCTTGTTCTGTCTGGGGCTGGCCAAGATAAGTTGGTCAGGACCCGGGTTGAAAATGCTCTAAAGTTTGCCATGAAGAAGCCTAAAACCAGTGCTGTGAAGCTTCCCTTTGGGCTTTGCGGTTGTCAAGAGGAGAACTCCAAAGGGAGAGAACCTGGAGAGATTGAAGAAGATGGCGGCAATGCGTACTTTGGAAATGGGTTTGAGAGTTTGAGCCAAAAGATTCAGCTTCAGGTGCCCTTGCCTAGTTCTTCTTTTCTTGTATCAGTAGATGAATGGCAGACTATTCAGTCAGGTGGAAATGAGTTGGAAAAATGGTTGTTGAACTCAGATAGTCTTGAGTTTACAGAACAGATTGGACCTAATTCGTATAAGGGCACCTACATGGGGAAAAGGGTTGGCATTGAGAAGCTTAGAGGGTGTGACAAAGGGAACTCTTATGAGTTTGAGCTCAGGAAAGATCTGCTAGAACTGATGACTTGTGGGCATAGAAATATTATGCAATTTTGTGGTGTTTGTGTAGATGAAAATCATGGGTTATGTGTAGTGATGAAATTCATGGAAGGTGGATCTGTTCATGATTTAATGTTAAAGAACAAGAAGCTTCAGAGTAAGGATATTGTAAGAATTGCAGTTGATGTGGCTGAGGGGATCAAGTTTATGAATGATCATGGTGTTGCATGCAGAGACCTTAATACACAGAGAATTCTGTTGGATAAGCATGGGAATGCTTGCTTGGGAGATATGGGTATAGTCACTGCCTGCAAGAGTGTCGGAGAGGCAATGGATTATGAAACTGATGGTTATCGGTGGCTAGCTCCAGAGGTTATTGCGGGTGACCCAGAGAGCGTGACAGAGACATGGATGAGTAATGTTTATAGTTTTGGCATGGTGATTTGGGAGATGGTAACAGGTGAAGCAGCCTATTCTGCATATTCACCTGTGCAGGCAGCAGTAGGCATAGCTGCTTGTGGCCTCAGACCTGAGATCCCCAAGGATTGCCCACAAACTCTAAAAACTATTATGACAAAGTGCTGGAACAACACCCCTTCAAAACGCCCCCAGTTCTCTGAAATTTTAGCTATATTGCTGCGACCAAACAACAATAGGTAA 1734 0.4544 MAAALECWSSRGGNNDEDMVEQVLMQRSEGPTVQAKDSSLVQKKLQKLTRNVSEAIASIKNTLNLNMNTNLDSSKLDASRNVVWGTVVRNLTQLYPGSQLPEKLMSNIRKHYDSLPLSYSQAGFDVKDVFLHMKLMEQAMEDEQAAILIQEECDGEIQLQGSLFKLTFACNSPISWPAMSGALDSSSICCKKIQIFEKKGLTLGIVLLLVLSGAGQDKLVRTRVENALKFAMKKPKTSAVKLPFGLCGCQEENSKGREPGEIEEDGGNAYFGNGFESLSQKIQLQVPLPSSSFLVSVDEWQTIQSGGNELEKWLLNSDSLEFTEQIGPNSYKGTYMGKRVGIEKLRGCDKGNSYEFELRKDLLELMTCGHRNIMQFCGVCVDENHGLCVVMKFMEGGSVHDLMLKNKKLQSKDIVRIAVDVAEGIKFMNDHGVACRDLNTQRILLDKHGNACLGDMGIVTACKSVGEAMDYETDGYRWLAPEVIAGDPESVTETWMSNVYSFGMVIWEMVTGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKTIMTKCWNNTPSKRPQFSEILAILLRPNNNR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi5000g00002 577 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 189 570 - -
Gabi5000g00002 577 Gene3D Transferase(Phosphotransferase) domain 1 314 574 - -
Gabi5000g00002 577 SUPERFAMILY Protein kinase-like (PK-like) 297 570 IPR011009 -
Gabi5000g00002 577 PRINTS Tyrosine kinase catalytic domain signature 391 404 IPR001245 GO:0004672|GO:0006468
Gabi5000g00002 577 PRINTS Tyrosine kinase catalytic domain signature 541 563 IPR001245 GO:0004672|GO:0006468
Gabi5000g00002 577 PRINTS Tyrosine kinase catalytic domain signature 427 445 IPR001245 GO:0004672|GO:0006468
Gabi5000g00002 577 PRINTS Tyrosine kinase catalytic domain signature 497 519 IPR001245 GO:0004672|GO:0006468
Gabi5000g00002 577 Pfam Protein tyrosine and serine/threonine kinase 356 569 IPR001245 GO:0004672|GO:0006468
Gabi5000g00002 577 ProSiteProfiles Protein kinase domain profile. 320 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi5000g00002 Gabi-Chr5000 24784 28391 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi5000g00002 311 570 MAP Kinase Kinase Kinase AT2G17700 33.708 6.02e-51 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-7 Gabi5000g00002 PK_Tyr_Ser-Thr 1.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi5000g00002 - - gmx:100811417 952.584